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Report for CCDS23100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23100.1 Public Mus musculus 9 Nlrx1 23 108 98 CCDS HistoryNCBI Gene:270151Re-query CCDS DB by CCDS ID:23100.1Re-query CCDS DB by GeneID:270151See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034621.15 ENSMUSP00000034621.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034621.15Link to Ensembl Protein Viewer:ENSMUSP00000034621.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034621Re-query CCDS DB by Protein ID:ENSMUSP00000034621
Original member Current member EBI ENSMUST00000169651.2 ENSMUSP00000126555.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169651.2Link to Ensembl Protein Viewer:ENSMUSP00000126555.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169651Re-query CCDS DB by Protein ID:ENSMUSP00000126555
Original member Current member EBI ENSMUST00000168499.8 ENSMUSP00000127531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168499.8Link to Ensembl Protein Viewer:ENSMUSP00000127531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168499Re-query CCDS DB by Protein ID:ENSMUSP00000127531
Original member Current member NCBI NM_001163742.1 NP_001157214.1 Accepted alive Link to Nucleotide Sequence:NM_001163742.1Link to Protein Sequence:NP_001157214.1Re-query CCDS DB by Nucleotide ID:NM_001163742Re-query CCDS DB by Protein ID:NP_001157214Link to BLAST:NP_001157214.1
Original member Current member NCBI NM_001163743.1 NP_001157215.1 Accepted alive Link to Nucleotide Sequence:NM_001163743.1Link to Protein Sequence:NP_001157215.1Re-query CCDS DB by Nucleotide ID:NM_001163743Re-query CCDS DB by Protein ID:NP_001157215Link to BLAST:NP_001157215.1
Original member Current member NCBI NM_178420.3 NP_848507.2 Accepted alive Link to Nucleotide Sequence:NM_178420.3Link to Protein Sequence:NP_848507.2Re-query CCDS DB by Nucleotide ID:NM_178420Re-query CCDS DB by Protein ID:NP_848507Link to BLAST:NP_848507.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157214.1 975 Q3TL44 975 100% 0 0
NP_001157215.1 975 Q3TL44 975 100% 0 0
NP_848507.2 975 Q3TL44 975 100% 0 0

Chromosomal Locations for CCDS 23100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44253218 44253539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44253992 44254243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44255431 44255517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44256332 44256927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44262232 44263053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44263629 44264248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44264703 44264791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44265164 44265233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44265744 44265813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGAGGTGGGGCTGCCATTTGCCCAGGACCTCTTGGGGCTCTGGCCTGGGAAGAACACCCCAGCTACCAG
ATGAGCATATCTCCTTCTTGATCCAGTGGAGCTGGCCCTTTAAAGGGGTGCATCCCCTGAGGCCCCCTAG
GGCCTTTATCCGTTACCATGGAAACTCGGCAGACAGTGCTCCCCCACCAGGGAGGCATGGGCAGCTGTTC
AGGAGCATCTCTGCCACAGAAGCTATCCAAAGGCATCGCCGGAACCTCACCGAGTGGTTTAGCCGACTGC
CCAGAGAGGAGCGCCAGTTTGGACCAACCTTTGCTCTAGACACAGTTCATGTTGACCCCGTGATCCGAGA
GAGCACCCCAGATGAGCTGCTTCGCCCGTCCACGGAGCTGGCCACGGGGCATCAGCAAACCCAGGCAGGG
CTCCCCCCACTGGCCCTGTCTCAGCTTTTTGACCCGGATTCTTGTGGGCGCCGCGTGCAGACCGTGGTGT
TGTATGGGACCGTGGGTACTGGCAAGAGCACGTTGGTACGGAAGATGGTCTTAGACTGGTGTTACGGGAG
ACTGCCTGCCTTTGAGCTTCTCATCCCCTTCTCCTGTGAGGACTTGTCATCCCTGGGCTCCACCCCAGCT
TCCCTGTGCCAACTTGTGACCCAGCGTTACACACCCCTGAAAGAGGTGTTGCCCCTGATGACTGCTGCGG
GATCCCGCCTGCTCTTTGTGCTCCATGGCTTGGAGCGCCTCAACCTTGACTTCCGGCTGGCAGGCACAGG
GCTTTGCAGTGACCCGGAGGAACCCGGGCCACCAGCTGCCATCATAGTCAACCTGCTGCGCAAATACATG
CTTCCCGAGGCCAGCATTCTGGTAACCACCCGGCCTTCCACCATTAGCCGAATCCCTAGCAAGTATGTGG
GCCGCTATGGTGAGATCTGTGGCTTCTCTGATACCAACCTGCAGAAGCTCTACTTCCAGCTCCGCCTTAA
CCAGCCTGACTGTGGGTACGGTGCTGGGGGTGCCAGTGTCTCAGTCACACCAGCTCAGCGCGACAACCTG
ATTCAAATGCTCTCCCGGAACCTGGAGGGGCACCACCAGATTGCCGCAGCCTGCTTTCTGCCTTCCTATT
GCTGGCTTGTCTGTGCTACTTTGCACTTCCTGCATGCTCCCACACCTGCTGGTCAGACCCTCACAAGCAT
CTATACCAGCTTTCTACGCCTGAACTTCAGTGGGGAAACACTGGACAGCACCCACACGTCCAATCTATCC
CTGATGTCCTATGCAGCCCGGACTATGGGCAAGCTGGCCTACGAGGGCGTGTCATCCCGAAAGACCTACT
TCTCTGAAGAGGATGTCCGTGGCTGCCTGGAAGCTGGCATCAAGACAGAGGAAGAGTTTCAACTGCTTCA
GATCTTCCGCAGGGACGCCCTGAGGTTTTTCCTGGCCCCGTGTGTGGAACCAGGGCACCTGGGTACCTTC
GTGTTCACCGTGCCCGCCATGCAGGAGTATCTGGCTGCCCTCTACATCGTGCTTGGTTTGCGCAAGACAG
CCCTGCAGCGGGTGGGCAAAGAAGTGGTTGAATTTGTGGGCCGTGTTGGGGAAGATGTCAGCCTGGTATT
GGGCATTGTGGCCAAGCTGTTGCCCCTGCGGATTCTGCCTCTGCTCTTCAACTTGCTCAAGGTAGTTCCG
CGAGTGTTTGGGCGCATGGTGAGTAAGAGCCGGGAGGCAGTGGCCCAGGCCATGGTGCTGGAGATGTTCC
GGGAGGAAGACTACTACAATGACGATGTTCTGGATCAGATGGGTGCCAGCATCCTGGGTGTGGAGGGCCC
CCGGCGCCACCCAGATGAACCCTCTGAGGATGAAGTCTTTGAGCTCTTCCCCATGTTCATGGGCGGACTT
CTCTCTGCCCACAACCGGGCGGTGCTGGCTCAGCTTGGCTGTCCCATCAAGAACCTGGATGCCCTGGAGA
ATGCCCAGGCCATCAAGAAGAAGCTGGGGAAGCTGGGTCGGCAGGTGCTGCCCCCCTCGGAGCTTCTTGA
CCATCTCTTCTTCCACTATGAGTTCCAGAACCAGCGCTTCTCAGCTGAGGTGCTGGGCTCCCTACGCCAG
CTCAATTTAGCAGGGGTGCGCATGACACCCCTCAAGTGCACAGTGGTAGCCTCTGTACTGGGAAGTGGAA
GGCACCCCCTGGATGAGGTGAACTTGGCCTCCTGCCAGCTGGATCCCGCTGGGCTACACACTCTCATGCC
TGTCCTCCTGCGTGCCCGGAAACTGGGGTTGCAACTCAACAATCTGGGCCCCGAGGCCTGCAGAGACCTC
CGAGACCTGCTCTTACACGATCAATGCCAGATCACCACTCTTAGGCTCTCCAACAACCCACTGACAGCAG
CTGGTGTGGGCTTACTGATGGACGGGCTGGCAGGAAACACTTCGGTGACACACCTGTCTCTGCTGCACAC
TGACCTTGGAGACGAGGGACTGGAACTGCTGGCTGCCCAGCTGGACCGAAACAAACAACTGCAGGAGCTG
AACGTGGCCTACAACGGTGCTGGTGACACAGTGGCTCTGGCCTTGGCTAAGGCTGCTCGGGAGCACCCTT
CCCTGGAGCTGCTGCACCTCTACTTCAATGAGCTGAGTTCAGAGGGCCGCCAGGTCCTGCGGGATTTGGG
GGGCTCTGGTGAAGGTGGTGCCCGGGTCGTAGCCTCGCTGACAGAAGGGACGGCGGTGTCTGAGTACTGG
TCAGTGATCCTTAGTGAAGTCCAGCGCAACGTCCACAGCTGGGACCCGCTCCGGGTCCAGAGGCATCTCA
AGCTGCTGCTCCGTGATCTGGAGGACAGCCGGGGCGCCACCCTTAATCCCTGGCGCAAGGCTCAGCTTCT
GCGAGTGGAGGGCGAGGTCAAGACTCTTCTGGAGCAGCTGGGAGGTTCTGGACACTGA

Translation (975 aa):
MRWGCHLPRTSWGSGLGRTPQLPDEHISFLIQWSWPFKGVHPLRPPRAFIRYHGNSADSAPPPGRHGQLF
RSISATEAIQRHRRNLTEWFSRLPREERQFGPTFALDTVHVDPVIRESTPDELLRPSTELATGHQQTQAG
LPPLALSQLFDPDSCGRRVQTVVLYGTVGTGKSTLVRKMVLDWCYGRLPAFELLIPFSCEDLSSLGSTPA
SLCQLVTQRYTPLKEVLPLMTAAGSRLLFVLHGLERLNLDFRLAGTGLCSDPEEPGPPAAIIVNLLRKYM
LPEASILVTTRPSTISRIPSKYVGRYGEICGFSDTNLQKLYFQLRLNQPDCGYGAGGASVSVTPAQRDNL
IQMLSRNLEGHHQIAAACFLPSYCWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGETLDSTHTSNLS
LMSYAARTMGKLAYEGVSSRKTYFSEEDVRGCLEAGIKTEEEFQLLQIFRRDALRFFLAPCVEPGHLGTF
VFTVPAMQEYLAALYIVLGLRKTALQRVGKEVVEFVGRVGEDVSLVLGIVAKLLPLRILPLLFNLLKVVP
RVFGRMVSKSREAVAQAMVLEMFREEDYYNDDVLDQMGASILGVEGPRRHPDEPSEDEVFELFPMFMGGL
LSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLGSLRQ
LNLAGVRMTPLKCTVVASVLGSGRHPLDEVNLASCQLDPAGLHTLMPVLLRARKLGLQLNNLGPEACRDL
RDLLLHDQCQITTLRLSNNPLTAAGVGLLMDGLAGNTSVTHLSLLHTDLGDEGLELLAAQLDRNKQLQEL
NVAYNGAGDTVALALAKAAREHPSLELLHLYFNELSSEGRQVLRDLGGSGEGGARVVASLTEGTAVSEYW
SVILSEVQRNVHSWDPLRVQRHLKLLLRDLEDSRGATLNPWRKAQLLRVEGEVKTLLEQLGGSGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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