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Report for CCDS19941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19941.1 Public Mus musculus 6 Iqub 23 108 98 CCDS HistoryNCBI Gene:214704Re-query CCDS DB by CCDS ID:19941.1Re-query CCDS DB by GeneID:214704See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052277.4 ENSMUSP00000051177.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052277.4Link to Ensembl Protein Viewer:ENSMUSP00000051177.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052277Re-query CCDS DB by Protein ID:ENSMUSP00000051177
Original member Current member NCBI NM_172535.3 NP_766123.2 Accepted alive Link to Nucleotide Sequence:NM_172535.3Link to Protein Sequence:NP_766123.2Re-query CCDS DB by Nucleotide ID:NM_172535Re-query CCDS DB by Protein ID:NP_766123Link to BLAST:NP_766123.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766123.2 788 Q8CDK3 788 100% 0 0

Chromosomal Locations for CCDS 19941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 24446057 24446242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24449684 24449869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24450604 24450852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24454137 24454313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24461863 24462033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24479144 24479319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24491464 24491674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24500243 24500398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24501013 24501185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24501268 24501429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24503752 24503886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 24505523 24505907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2367 nt):
ATGTCTGATCCCGAGGAAGAACGTGTCGCTGACTCCACCGCCCACTATGAAGAGGCTGGCAAAGTCATCA
GTATTCCTCGTCCTTCAGACGAAGCAGAAGGGTCAGATGTGATGCCAGAGCAAGACGATGAAGTGCAGGA
ACTCACCACCGAGAGCGAGGAGAACGTGGAGAGGCATAGTGAATTTAGTCTTTCAACCCCCAAATCCGAC
GACTCCAAACCCAGGGAAGAGGTCACGTCCCTTGGAAGTGCCTCAGGATCTCAGGATCAAGATTACAGAC
TTTTGGATTACCAGAAAGGAGAAGATGATGAGCTGTTATTTCTGCATAAGATAAAAGCTATAAAGGAGAC
TTTGCAGACGTCAGTGAGAGAGTCTATAGCAACAGTAAAAATTGTACTTATTCCTGCAGGCCAGGAAATT
ATAATGCCTTTTAGAGTTGATGCTCCATTTAGATTCCTCAAGGAGCACTTTGCACACTTATTACATATCC
CACATTATGTACTGCAAATAACACATGAAGGCATCATTGTTGGGAATAATGAATCTCTAATACAATATGG
AATCAAACCACAAGAAATTGTTCAAGTGGAGGTGTTTTCCACACTTCCTGACCAATATCCAGTCAGAAGA
ATAGAGGGCTTGAGTGAGGGCTCCCAGATCATAACGGTCACCATTCAGACCAGCATCGATCGCTATGAGG
AGGTAGCAGTTGAGATAATAAAATCTGACTTCCACAAGCCATTTCTTGGAGGATTTAGACATAAAATAAC
AGGACTAGAATATCACAACGCTGGAACACAAACTGTACCTAGAAAGATTCCTGAAAAAGACAATCTGTTC
TGTAGGGACACCCAGACAGTTTTTCAGAAAAAAAAGCTACAACAAACTACAAATACCACCTCCACTCAGA
TGACTAAAATTGGTGTGTATGTATCAAACATGACCGATAAACTGCTCAAGCCAGGAAATTACTTTTCAGC
AGCAGAGTACCACGCTCGACGGTTGCATGCGGTTATAGTGATACAGACTTCCTACAGGCGGTGGCACGCT
AAGCGCTATGTAGAAAGCTTAAGAAAACAAAAGAAATTGAGGTTGGAGTGGGAAGAAGAGCAAGAACTCC
TGAAGATTCAAGAGAAGGAAGAATGGATACGAATGGACTATTACCGGAGGCACAACCCTAAAACAACTGA
AGATTTTGAGCTCCTTTACAATGCTCTGGAACTCTGGCGGCAAGAAGAAGTTGAACAAATTTGCCATTAT
TCAAGTGAAGCTGAAAGGAAGGCTGCTCTGTGTGAGCTATTGGAAAAAGAGACACAGATGATTGCTTCCA
TCGGGAGACATAGATCCGCTGCTCGTATGGAGAGGCAGGATGCAGCTATCCAAGCTTTTCTGGATAAGTG
TTCAGCTCCAAATGTCTGGAGAAGAGGTGATGGCAAAACCATTGAAATGGATACACAGTTCACGATAAGA
GCCAGAGAGCTGCAAAGCATCTACAAGTGTATCCTGCTGAAAGACCTCTCTCAAGACGAGAGGCTGGATA
TACTCCTGACGCTTAAACACACTGTGAAGGAACATGAGTGTAAACTGACTCAAGAAATCCTAGAACTGAT
TGACAGAGAAGTTGACCTTATGATGAGAGGAGTCAAACCTCATAATCTCGAAGGACTCAGAAAGAGAATC
ACAACGCTCTTTATTCACTACATCAAAACTCCTCTGTTTAATCCTGAAGTTGCAAAGTACCTTAAGGTCC
CTCAAGACCCACTGAAGTTTTATGATACGATTTACTTTTGCCACAGTTGCCAAAATTATTTGCCTTCTGT
GGAGTTTTCTGTCTCACCCACCTCCCACCGTGTGTACCGCTGCCGCCACTGCATAAACCTGGAGAATGAG
ACTCAGAGGCGGGAATCGTTTTTGAAGTACAAGTGTTTACTTCAGCGGCTCTACTACTCTGAAGCTGATT
ATGGGGATAACTCCCAGATTGCTTTTCTGATGCAGCTTCAGGATATTAAATACTTGACAGAGAACATCTG
GGCATCCCAGTCGGCCCTCAGTGCCTGGGATGATCTCAATGACCTGGTCATGGTCAGGTGGGATAAACAC
GTGGAGTGGTCTCCCTGGAACTGCATTCTTCTCACCAAGGATGAAAGCACAGCTCACCTCAGGCTACCGA
GTATTGAAAAGGGGTATGGACACCATTTTGTTCACAAGATCAAGCACAAACATATCCTGGCTAAAAACTA
TTTTTCACAGATCCCAACGTTGGCGTCACTTATACTTAATGATGATGAAGTAGAAGATATCAGGAGTAAA
CACTCCACAAAGAGTCCACCCAAAATCATAATAACCCGTAGGATTCAACCTCATTAG

Translation (788 aa):
MSDPEEERVADSTAHYEEAGKVISIPRPSDEAEGSDVMPEQDDEVQELTTESEENVERHSEFSLSTPKSD
DSKPREEVTSLGSASGSQDQDYRLLDYQKGEDDELLFLHKIKAIKETLQTSVRESIATVKIVLIPAGQEI
IMPFRVDAPFRFLKEHFAHLLHIPHYVLQITHEGIIVGNNESLIQYGIKPQEIVQVEVFSTLPDQYPVRR
IEGLSEGSQIITVTIQTSIDRYEEVAVEIIKSDFHKPFLGGFRHKITGLEYHNAGTQTVPRKIPEKDNLF
CRDTQTVFQKKKLQQTTNTTSTQMTKIGVYVSNMTDKLLKPGNYFSAAEYHARRLHAVIVIQTSYRRWHA
KRYVESLRKQKKLRLEWEEEQELLKIQEKEEWIRMDYYRRHNPKTTEDFELLYNALELWRQEEVEQICHY
SSEAERKAALCELLEKETQMIASIGRHRSAARMERQDAAIQAFLDKCSAPNVWRRGDGKTIEMDTQFTIR
ARELQSIYKCILLKDLSQDERLDILLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKPHNLEGLRKRI
TTLFIHYIKTPLFNPEVAKYLKVPQDPLKFYDTIYFCHSCQNYLPSVEFSVSPTSHRVYRCRHCINLENE
TQRRESFLKYKCLLQRLYYSEADYGDNSQIAFLMQLQDIKYLTENIWASQSALSAWDDLNDLVMVRWDKH
VEWSPWNCILLTKDESTAHLRLPSIEKGYGHHFVHKIKHKHILAKNYFSQIPTLASLILNDDEVEDIRSK
HSTKSPPKIIITRRIQPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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