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Report for CCDS48503.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48503.1 Public Mus musculus 10 Pex3 23 108 98 CCDS HistoryNCBI Gene:56535Re-query CCDS DB by CCDS ID:48503.1Re-query CCDS DB by GeneID:56535See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48503.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170376.7 ENSMUSP00000128512.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170376.7Link to Ensembl Protein Viewer:ENSMUSP00000128512.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170376Re-query CCDS DB by Protein ID:ENSMUSP00000128512
Original member Current member NCBI NM_001164195.1 NP_001157667.1 Accepted alive Link to Nucleotide Sequence:NM_001164195.1Link to Protein Sequence:NP_001157667.1Re-query CCDS DB by Nucleotide ID:NM_001164195Re-query CCDS DB by Protein ID:NP_001157667Link to BLAST:NP_001157667.1

Chromosomal Locations for CCDS 48503.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13523899 13523943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13527741 13527837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13531258 13531380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13532340 13532410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13534672 13534837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535555 13535609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535709 13535775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535943 13536067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13537431 13537474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13542624 13542705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13546350 13546481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13552826 13552898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGCTGAGATCAATGTGGAATTTTCTGAAACGTCACAAAAAGAAATGCATCTTCCTGGGCACAGTCCTCG
GAGGAGTATATATCCTGGGAAAATATGGACAGAAAAAAATTAGAGAAATACAAGAAAGAGAAGCTGCAGA
ATACATTGCCCAAGCTCGGCGACAGTACCATTTTGAAAGCAACCAGAGGACTTGCAATATGACAGTGCTG
TCCATGCTGCCGACACTGAGAGAGGCCTTAATGCAGCAGCTCAACTCGGAGAGTCTCACAGCTCTGTTGA
AAAGCAGGCCTTCAAACAAGCTGGAAATATGGGAGGACCTAAAGATAATAAGTTTCACAAGAAGTATTGT
AGCTGTATATAGCACGTGTATGCTGGTGGTTCTTTTGCGAGTCCAGTTAAACATAATTGGTGGATATATT
TACCTGGATAATGCAACAGTTGGCAAAAATGGCACTACCGTTCTTGCTCCTCCGGATGTACAGCAGCAGT
ATTTATCAAGTATTCAACACCTCCTTGGAGACGGCCTCACAGAGTTGGTCACTGTCATTAAACAAGCTGT
ACAAAGGATCTTAGGAAGTGTCTCTCTTAAACATTCCTTGTCCCTTTTGGACTTGGAGCAAAAACTAAAA
GAAATCAGAATTCTTGTTGAGCAACATCAGTCTTCTTGGAATGATAAAGATGTGTCCAGGTCTTCACTGT
GCCAGTACATGATGCCAGATGAGGAGACACCATTGGCAGCTCAGGCCTATGGGCTTTCTCACAGAGATAT
CACCACTATTAAACTTCTCAATGAGACAAGAGACATGCTGGAAAGTCCAGATTTTAGTACAGTTTTGAAT
ACCTGTCTAAACAGAGGCTTCAGTCGGCTTCTAGACAACATGGCCGAATTCTTTCGACCCACTGAGCAGG
ACCTACAGCATGGTAACTCCATAAACAGTCTGTCCAGTGTCAGCCTGCCTTTAGCTAAGATAATTCCCAT
AGTGAACGGGCAGATCCATTCAGTTTGCAGTGAGACACCTAGTCATTTTGTGCAGCTTACCTGTGGTTCT
TCATTGAGAAGGGCATTAGAGCAGAAGTGA

Translation (359 aa):
MLRSMWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVL
SMLPTLREALMQQLNSESLTALLKSRPSNKLEIWEDLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYI
YLDNATVGKNGTTVLAPPDVQQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLK
EIRILVEQHQSSWNDKDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFSTVLN
TCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQLTCGS
SLRRALEQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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