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Report for CCDS38858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38858.1 Public Mus musculus 4 Svbp 23 108 98 CCDS HistoryNCBI Gene:69216Re-query CCDS DB by CCDS ID:38858.1Re-query CCDS DB by GeneID:69216See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030395.8 ENSMUSP00000030395.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030395.8Link to Ensembl Protein Viewer:ENSMUSP00000030395.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030395Re-query CCDS DB by Protein ID:ENSMUSP00000030395
Original member Current member NCBI NM_024462.2 NP_077782.1 Accepted alive Link to Nucleotide Sequence:NM_024462.2Link to Protein Sequence:NP_077782.1Re-query CCDS DB by Nucleotide ID:NM_024462Re-query CCDS DB by Protein ID:NP_077782Link to BLAST:NP_077782.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077782.1 66 Q99LQ4 66 100% 0 0

Chromosomal Locations for CCDS 38858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 119195908 119196021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 119200897 119200983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (201 nt):
ATGGATCCACCTGCCCGGAAAGAAAAATCCAAAGTTAAAGAACCAGCCTTCAGAGTGGAGAAGGCTAAGC
AGAAATCTGCCCAGCAGGAGCTGAAGCAAAGACAGAGAGCAGAGATCTATGCTCTCAACAGAGTCATGAC
GGAGCTGGAGCAGCAGCAGTTTGATGAGTTCTGTAAGCAGATGCAGCCGCCTGGGGAGTGA

Translation (66 aa):
MDPPARKEKSKVKEPAFRVEKAKQKSAQQELKQRQRAEIYALNRVMTELEQQQFDEFCKQMQPPGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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