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Report for CCDS25452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25452.1 Public Mus musculus 11 Tubg2 23 108 98 CCDS HistoryNCBI Gene:103768Re-query CCDS DB by CCDS ID:25452.1Re-query CCDS DB by GeneID:103768See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043654.9 ENSMUSP00000045901.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043654.9Link to Ensembl Protein Viewer:ENSMUSP00000045901.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000043654Re-query CCDS DB by Protein ID:ENSMUSP00000045901
Original member Current member NCBI NM_134028.2 NP_598789.1 Accepted alive Link to Nucleotide Sequence:NM_134028.2Link to Protein Sequence:NP_598789.1Re-query CCDS DB by Nucleotide ID:NM_134028Re-query CCDS DB by Protein ID:NP_598789Link to BLAST:NP_598789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598789.1 451 Q8VCK3 451 100% 0 0

Chromosomal Locations for CCDS 25452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101156120 101156168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101156448 101156560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101156753 101156920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101157452 101157520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101157783 101157862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101159009 101159135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101160057 101160143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101160247 101160396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101160794 101160946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101161027 101161188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101161405 101161602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCCCCGGGAGATCATCACCCTGCAGCTGGGCCAGTGCGGCAACCAGATTGGGTTCGAGTTCTGGAAAC
AGCTGTGTGCTGAACATGGAATCAGCCCCGAGGGCATCGTAGAGGAGTTCGCCACCGAGGGCACTGACCG
AAAGGATGTCTTTTTCTACCAGGCAGATGATGAGCACTACATCCCCCGGGCTGTGCTGCTGGACCTGGAG
CCCCGGGTGATCCATTCCATCCTCAACTCCTCCTATGCTAAGCTCTACAACCCGGAGAACATCTACCTGT
CGGAGCATGGCGGAGGAGCTGGCAACAACTGGGGCAGAGGATTCTCCCAGGGTGAGAAAATTCACGAGGA
CATCTTTGACATTATAGACCGAGAAGCAGATGGAAGTGACAGTCTAGAGGGATTTGTGCTATGTCACTCC
ATTGCTGGGGGGACAGGTTCTGGTCTGGGCTCCTACCTCTTAGAGCGACTGAACGACAGGTACCCCAAGA
AATTGGTGCAGACATACTCAGTGTTTCCCAACCAGGACGAGATGAGTGATGTAGTGGTCCAGCCCTACAA
CTCCCTCCTCACACTAAAGAGGCTGACCCAGAATGCGGACTGCGTGGTGGTGCTGGACAACACAGCCCTG
AACCGGATCGCCACAGACCGCCTACACATCCAGAACCCATCCTTCTCCCAGATCAACCAGCTGGTGTCCA
CCATCATGTCAGCCAGCACCACCACCCTGCGCTACCCTGGATACATGAACAATGACCTCATCGGCCTCAT
CGCCTCGCTCATTCCCACCCCTCGGCTCCACTTCCTCATGACTGGCTACACCCCCCTCACCACGGACCAG
TCAGTGGCCAGTGTGAGGAAGACAACAGTCCTGGATGTCATGAGGCGCCTGCTACAGCCCAAGAATGTGA
TGGTGTCCACAGGTCGGGATCGTCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGAGA
GGTAGACCCCACCCAGGTCCACAAGAGCCTGCAGAGGATCCGGGAAAGGAAACTGGCCAACTTCATTCCC
TGGGGCCCAGCCAGCATCCAGGTGGCCCTGTCAAGGAAGTCTCCCTACCTGCCCTCAGCCCACCGGGTCA
GCGGGCTCATGATGGCCAACCACACCAGTATCTCCTCGCTTTTTGAAAGTTCCTGCCAGCAGTATGACAA
ACTGTGGAAGCGGGGGGCCTTCCTGGAACAGTTTCGCAAGGAGGACATCTTCAAGGACAACTTTGAGGAG
ATGCACAGATCGAGGGAGGTGGTGCAGGAACTCATTGACGAGTACCACGCGGCCACCCGGCCGGACTACA
TCTCCTGGGGTACCCAGGAGCAGTGA

Translation (451 aa):
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLE
PRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHS
IAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTAL
NRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQ
SVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIP
WGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQYDKLWKRGAFLEQFRKEDIFKDNFEE
MHRSREVVQELIDEYHAATRPDYISWGTQEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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