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Report for CCDS29830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29830.1 Public Mus musculus 19 Loxl4 23 108 98 CCDS HistoryNCBI Gene:67573Re-query CCDS DB by CCDS ID:29830.1Re-query CCDS DB by GeneID:67573See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026190.13 ENSMUSP00000026190.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026190.13Link to Ensembl Protein Viewer:ENSMUSP00000026190.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026190Re-query CCDS DB by Protein ID:ENSMUSP00000026190
Original member Current member EBI ENSMUST00000171432.1 ENSMUSP00000126686.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171432.1Link to Ensembl Protein Viewer:ENSMUSP00000126686.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171432Re-query CCDS DB by Protein ID:ENSMUSP00000126686
Original member Current member NCBI NM_053083.3 NP_444313.3 Accepted alive Link to Nucleotide Sequence:NM_053083.3Link to Protein Sequence:NP_444313.3Re-query CCDS DB by Nucleotide ID:NM_053083Re-query CCDS DB by Protein ID:NP_444313Link to BLAST:NP_444313.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444313.3 757 Q924C6 757 100% 0 0

Chromosomal Locations for CCDS 29830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42595334 42595404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42597498 42597609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42597945 42598081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42598701 42598816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42599877 42600120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42602173 42602335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42603187 42603354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42603855 42604009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42604132 42604315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42604807 42605026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42605246 42605284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42606570 42606775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42607554 42607732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42608252 42608531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGATGTGGCCCCAACCACCCACCTTCTCCCTGTTCCTGCTACTGCTGCTAAGCCAAGCCCCTTCCAGCA
GGCCACAGTCATCAGGCACCAAGAAGCTCAGGCTTGTGGGGCCAACGGACAGACCAGAGGAGGGCCGCTT
GGAGGTGCTGCACCAGGGCCAGTGGGGCACGGTGTGTGATGATGACTTCGCTCTCCAGGAGGCTACTGTG
GCCTGCCGACAGCTGGGCTTTGAGTCAGCCTTGACCTGGGCACACAGTGCCAAGTATGGTCAAGGAGAGG
GTCCCATCTGGCTGGACAATGTTCGTTGTTTGGGCACCGAGAAGACCCTAGATCAGTGTGGCTCTAACGG
CTGGGGTGTCAGTGACTGCAGACACTCAGAAGATGTTGGGGTGGTATGTCACCCACGGCGCCAGCACGGA
TATCACTCTGAGAAGGTCTCCAATGCCCTCGGGCCTCAGGGCCGGCGGCTAGAAGAGGTACGGCTGAAAC
CCATCCTCGCCAGTGCCAAAAGGCACAGCCCAGTGACTGAGGGGGCTGTGGAAGTACGGTACGACGGCCA
CTGGAGGCAGGTGTGTGACCAGGGCTGGACCATGAACAACAGCAGGGTTGTATGCGGGATGCTGGGCTTT
CCCAGTCAGACATCTGTCAACAGCCACTACTACAGAAAAGTCTGGAATCTGAAGATGAAGGATCCCAAGT
CTAGGCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCC
CCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAGCTTCGGCCAGCCTGTCCAGGCGGC
ATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGG
AGTCCCATGCAGAGGAGCTGAAAGTGCGCCTGCGCTCTGGGGCTCAGGTGGGTGAGGGCCGTGTGGAAGT
GCTCATGAACCGCCAGTGGGGCACAGTCTGTGACCACAGGTGGAACCTCATCTCAGCCAGCGTCGTGTGT
CGCCAGCTTGGCTTTGGCTCTGCCCGGGAGGCCCTTTTTGGGGCCCAGTTGGGTCAAGGGCTAGGACCCA
TCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTC
CCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAAC
AAGGTGCGCTTGGCTGGTGGGCGCAACTCCGAAGAGGGAGTGGTGGAGGTGCAGGTGGAGGTGAATGGGG
TCCCACGATGGGGGACTGTATGCAGTGACCACTGGGGGCTCACCGAAGCCATGGTGACCTGTCGGCAACT
TGGTCTGGGATTTGCCAACTTTGCTCTCAAGGACACCTGGTACTGGCAGGGGACACCAGAGGCCAAAGAA
GTGGTGATGAGTGGAGTTCGCTGCTCAGGCACAGAAATGGCCCTGCAGCAGTGTCAGAGACATGGGCCCG
TGCACTGTTCCCACGGCCCAGGGCGCTTCTCGGCTGGCGTTGCCTGTATGAACAGTGCTCCAGACCTCGT
GATGAACGCCCAGCTGGTACAAGAGACGGCGTACTTGGAGGATCGTCCACTCAGCATGCTGTACTGTGCT
CACGAGGAAAACTGCCTTTCCAAGTCCGCTGATCACATGGACTGGCCCTACGGGTACCGGCGCTTGCTGC
GCTTCTCCTCACAGATCTACAACCTTGGCCGGGCCGACTTCCGTCCCAAGGCTGGACGCCACAGCTGGAT
TTGGCACCAGTGCCACAGGCACTACCACAGCATCGAAGTCTTCACTCATTATGACCTGCTCACGCTCAAT
GGCTCCAAGGTGGCCGAGGGACACAAGGCCAGCTTCTGTCTAGAAGATACAAACTGCCCCTCAGGAGTGC
AGCGGCGCTATGCATGTGCCAACTTTGGGGAACAGGGAGTGGCTGTAGGCTGCTGGGACACCTACCGGCA
TGACATCGATTGCCAGTGGGTGGATATCACAGATGTGGGTCCAGGGGACTATATCTTCCAGGTGGTTGTG
AACCCCACAAACGATGTTGCAGAGTCCGATTTCTCCAATAACATGATACGGTGCCGCTGCAAGTATGATG
GACAGCGAGTCTGGTTGCACAACTGCCACACAGGAGATTCCTACCGAGCCAATGCAGAGCTCTCCCTGGA
GCAGGAACAGCGACTCAGGAACAACTTGATCTGA

Translation (757 aa):
MMWPQPPTFSLFLLLLLSQAPSSRPQSSGTKKLRLVGPTDRPEEGRLEVLHQGQWGTVCDDDFALQEATV
ACRQLGFESALTWAHSAKYGQGEGPIWLDNVRCLGTEKTLDQCGSNGWGVSDCRHSEDVGVVCHPRRQHG
YHSEKVSNALGPQGRRLEEVRLKPILASAKRHSPVTEGAVEVRYDGHWRQVCDQGWTMNNSRVVCGMLGF
PSQTSVNSHYYRKVWNLKMKDPKSRLNSLTKKNSFWIHRVDCLGTEPHLAKCQVQVAPGRGKLRPACPGG
MHAVVSCVAGPHFRRQKPKPTRKESHAEELKVRLRSGAQVGEGRVEVLMNRQWGTVCDHRWNLISASVVC
RQLGFGSAREALFGAQLGQGLGPIHLSEVRCRGYERTLGDCLALEGSQNGCQHANDAAVRCNIPDMGFQN
KVRLAGGRNSEEGVVEVQVEVNGVPRWGTVCSDHWGLTEAMVTCRQLGLGFANFALKDTWYWQGTPEAKE
VVMSGVRCSGTEMALQQCQRHGPVHCSHGPGRFSAGVACMNSAPDLVMNAQLVQETAYLEDRPLSMLYCA
HEENCLSKSADHMDWPYGYRRLLRFSSQIYNLGRADFRPKAGRHSWIWHQCHRHYHSIEVFTHYDLLTLN
GSKVAEGHKASFCLEDTNCPSGVQRRYACANFGEQGVAVGCWDTYRHDIDCQWVDITDVGPGDYIFQVVV
NPTNDVAESDFSNNMIRCRCKYDGQRVWLHNCHTGDSYRANAELSLEQEQRLRNNLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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