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Report for CCDS27359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27359.1 Public Mus musculus 15 Fbxo4 23 108 98 CCDS HistoryNCBI Gene:106052Re-query CCDS DB by CCDS ID:27359.1Re-query CCDS DB by GeneID:106052See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022791.8 ENSMUSP00000022791.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022791.8Link to Ensembl Protein Viewer:ENSMUSP00000022791.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022791Re-query CCDS DB by Protein ID:ENSMUSP00000022791
Original member Current member NCBI NM_134099.2 NP_598860.2 Accepted alive Link to Nucleotide Sequence:NM_134099.2Link to Protein Sequence:NP_598860.2Re-query CCDS DB by Nucleotide ID:NM_134099Re-query CCDS DB by Protein ID:NP_598860Link to BLAST:NP_598860.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598860.2 385 Q8CHQ0 385 100% 0 0

Chromosomal Locations for CCDS 27359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 3965703 3965792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3968907 3969082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3971337 3971512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3971629 3971704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3975757 3975977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3977762 3977997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 3979242 3979424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCTGGAAGCGAGCCCCGCGGAGCCGGCTCCCCGCCGCCCGCCAGCGACTGGGGCCGCCTGGAGGCAG
CCATCCTGAGCGGCTGGAGGACCTTCTGGTATTCGGTGGCCAAGGAGCGGGCGACGCCGACGGCCTCCCG
GAAGGAGGCGGCGGAGGAGACGAGCGCGCTGACGCGGCTGCCGGTTGATGTGCAGTTGTATATCTTGTCG
TTTCTTTCACCCCACGATCTGTGCCAGCTGGGAAGTACAGATCATTACTGGAACAAAACTATAAGAGACC
CAATTCTCTGGAGATACTTTCTGTTGCGGGATCTCCCTTCTTGGTCTTCGGTTGATTGGAAGTCACTTCC
AGATCTAGAGATCTTAAAAAAGCCAATATCTGAGGTCACCGACAGCACTTGTCTTGATTACATGGAGGTT
TATAAAATGTGCTGTCCATATACGCGAAGAGCCTTGAAAGCCAGCCGTCCTATGTATGGAGTGGTTACCT
CTTTCTTACACTCACTGATCATTCAGAATGAACCCCGGTTTGCTATGTTTGGACCAGGTTTGGAAGAACT
GAACACATCCTTGGTGTTGAGTTTGATGTCTTCTGAGGACCTTTGCCCAACTGCTGGTTTACCTCACAGA
CAGATTGATGGTATTGGATCTGGAGTCAACTTCCAGTTGAATAACCAGCAAAAATTCAACATCCTGATAT
TATACTCGACTACCAGAAAAGAAAGAGACAGAGCAAGGGAGGAGCACACCAGCACCGTTAACAAGATGTT
CAGCCTACAGAGTGAGGGGGACGAGCAGCAGGGCAGCCGCTACAGTGTGATCCCGCAGATTCAGAAAGTG
TGTGAAGTCGTAGACGGGTTCATCTACGTGGCAAACGCTGAAGCTCACCGACGTCATGAATGGCAAGATG
AATTTTCTCGGATTATGGCCATGACAGACCCAGCTTTTGGATCTTCAGGAAGACCCATGCTGGTTTTATC
TTGTATTTCTCAAGCAGATGTAAAGAGAATGCCTTGTTTTTATTTAGCTCATGAGCTGCACCTCAGTCTT
CTAAACCACCCATGGATGGTCCAGGATACAGAGGCTGAAACTCTGACTGGTTTTTTGAATGGCATTGAGT
GGATTCTTGAAGAAGTAGAATCTAAGCGTGCAAAATGA

Translation (385 aa):
MAGSEPRGAGSPPPASDWGRLEAAILSGWRTFWYSVAKERATPTASRKEAAEETSALTRLPVDVQLYILS
FLSPHDLCQLGSTDHYWNKTIRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDSTCLDYMEV
YKMCCPYTRRALKASRPMYGVVTSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEDLCPTAGLPHR
QIDGIGSGVNFQLNNQQKFNILILYSTTRKERDRAREEHTSTVNKMFSLQSEGDEQQGSRYSVIPQIQKV
CEVVDGFIYVANAEAHRRHEWQDEFSRIMAMTDPAFGSSGRPMLVLSCISQADVKRMPCFYLAHELHLSL
LNHPWMVQDTEAETLTGFLNGIEWILEEVESKRAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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