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Report for CCDS48659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48659.1 Public Mus musculus 10 Syn3 23 108 98 CCDS HistoryNCBI Gene:27204Re-query CCDS DB by CCDS ID:48659.1Re-query CCDS DB by GeneID:27204See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121789.1 ENSMUSP00000113408.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121789.1Link to Ensembl Protein Viewer:ENSMUSP00000113408.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121789Re-query CCDS DB by Protein ID:ENSMUSP00000113408
Original member Current member NCBI NM_001164495.1 NP_001157967.1 Accepted alive Link to Nucleotide Sequence:NM_001164495.1Link to Protein Sequence:NP_001157967.1Re-query CCDS DB by Nucleotide ID:NM_001164495Re-query CCDS DB by Protein ID:NP_001157967Link to BLAST:NP_001157967.1

Chromosomal Locations for CCDS 48659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86294628 86294651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86351551 86351640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86354346 86354502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86407613 86407704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86448866 86448923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86466979 86467289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAACTTCCTCCGGAGGCGGCTGTCTGACAGCAGCTTTGTGGCCAACCTGCCCAATGGCTACATGCCGG
ACCTGCAGCGCCCAGAGAGCTCCAGTAGCTCTCCAGCATCCCCGGCCACAGAGAGGAGGCACCCCCAGCC
CCTGGCTGCCTCCTTCTCATCTCCAGGATCCAGCCTGTTCAGCTCCTTCTCCGGTGCCATGAAACAGACC
CCACAGGCTCCCTCAGGGCTGATGGAACCACCCACTCCTGTCACACCCGTGGTTCAGAGACCCAGGATCT
TGTTGGTTATCGATGACGCCCATACAGACTGGTCAAAGTATTTTCATGGGAAGAAAGTGAATGGCGACAT
TGAGATCCGAGTGGAACAGGCTGAGTTCTCTGAGCTGAACCTGGCTGCTTATGTTACCGGAGGCTGCATG
GTGGACATGCAAGTTGTGAGAAATGGCACCAAAATTGTGCGGTCCTTCAAACCTGACTTCATCCTGGTCC
GACAGCATGCCTACAGCATGGCCCTGGCTGAGGACTACCGGAGCCTGGTCATCGGCCTCCAGTATGGAGG
GCTTCCTGCTGTCAACTCTCTCTACTCCGTATACAACTTCTGCAGCAAGCCTTGGGTGTTTTCTCAGCTC
ATTAAGATCTTCCATTCCTTGGGTCCTGAGAAATTTCCACTAGTGGAGCAAACATTTTTCCCCAACCACA
AGCCAATGCATTTTACTCATTCCCTCCGATGA

Translation (243 aa):
MNFLRRRLSDSSFVANLPNGYMPDLQRPESSSSSPASPATERRHPQPLAASFSSPGSSLFSSFSGAMKQT
PQAPSGLMEPPTPVTPVVQRPRILLVIDDAHTDWSKYFHGKKVNGDIEIRVEQAEFSELNLAAYVTGGCM
VDMQVVRNGTKIVRSFKPDFILVRQHAYSMALAEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQL
IKIFHSLGPEKFPLVEQTFFPNHKPMHFTHSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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