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Report for CCDS52789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52789.1 Public Mus musculus 9 Tmprss5 23 108 98 CCDS HistoryNCBI Gene:80893Re-query CCDS DB by CCDS ID:52789.1Re-query CCDS DB by GeneID:80893See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070390.11 ENSMUSP00000064527.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070390.11Link to Ensembl Protein Viewer:ENSMUSP00000064527.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070390Re-query CCDS DB by Protein ID:ENSMUSP00000064527
Original member NCBI NM_030709.2 NP_109634.2 Updated not alive Link to Nucleotide Sequence:NM_030709.2Link to Protein Sequence:NP_109634.2Re-query CCDS DB by Nucleotide ID:NM_030709Re-query CCDS DB by Protein ID:NP_109634
Current member NCBI NM_030709.3 NP_109634.2 Accepted alive Link to Nucleotide Sequence:NM_030709.3Link to Protein Sequence:NP_109634.2Re-query CCDS DB by Nucleotide ID:NM_030709Re-query CCDS DB by Protein ID:NP_109634Link to BLAST:NP_109634.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109634.2 445 Q9ER04-4 445 100% 0 0

Chromosomal Locations for CCDS 52789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 49106141 49106216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49106501 49106599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49107077 49107199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49109002 49109137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49109342 49109455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49111468 49111511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49112188 49112350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49113124 49113302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49114494 49114592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49115033 49115175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49115465 49115617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 49116983 49116991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGATCTTCAGAATGGAGTTGGGAGACCAGAGGC
AATCCATTTCTCAGTCCCAACGCTGGTGCTGCCTGCAACGTGGCTGTGTTATACTGGGCGTCCTGGGGCT
TCTGGCTGGAGCAGGCATTGCTTCATGGCTCTTAGTGTTGTATCTATGGCCAGCTGCCTCTCCATCCATC
TCTGGGACGTTGCAGGAGGAGGAGATGACTTTGAACTGTCCAGGAGTGAGCCGTGAGGAAGAGCTCCTTC
CATCTCTTCCCAAAACAGTATCTTTCAGAATAAATGGAGAGGATCTTCTGCTTCAAGTACAAGTAAGAGC
TCGGCCAGACTGGCTCCTGGTCTGCCACGAGGGCTGGAGCCCCGCCCTGGGCATGCACATCTGCAAGAGT
CTTGGGCATATCAGGCTTACTCAACACAAGGCCGTGAATCTGTCTGACATCAAGCTCAACAGATCCCAGG
AGTTTGCTCAACTCTCTGCTAGACCGGGAGGCCTTGTAGAGGAGTCATGGAAACCCAGCGCTAACTGTCC
TTCTGGCCGAATTGTTTCTCTCAAATGTTCTGAGTGTGGGGCAAGGCCTCTGGCTTCTCGAATAGTTGGC
GGCCAAGCTGTGGCTTCTGGGCGCTGGCCATGGCAAGCTAGCGTGATGCTTGGCTCCCGGCACACGTGTG
GGGCCTCTGTGTTGGCACCACACTGGGTAGTGACTGCTGCCCACTGCATGTACAGTTTCAGGCTGTCCCG
CCTATCCAGCTGGCGGGTTCATGCAGGGCTGGTCAGCCACGGTGCTGTCCGACAACACCAGGGAACTATG
GTGGAGAAGATCATTCCCCACCCTTTGTACAGTGCCCAGAACCATGACTATGATGTGGCTCTGCTGCAGC
TCCGGACACCAATCAACTTCTCAGACACCGTGGGCGCTGTGTGCTTGCCGGCCAAGGAGCAGCACTTTCC
ATGGGGGTCGCAGTGCTGGGTGTCTGGCTGGGGCCACACCGACCCCAGCCATACTCATAGCTCAGATACA
CTGCAGGACACAATGGTACCCCTGCTCAGCACCTACCTCTGCAACAGCTCATGCATGTACAGTGGGGCAC
TTACACACCGCATGTTGTGTGCTGGCTACCTGGATGGAAGGGCAGACGCATGCCAGGGAGACAGCGGGGG
ACCCCTGGTATGTCCCAGTGGTGACACGTGGCACCTTGTAGGGGTGGTCAGCTGGGGTCGTGGCTGTGCA
GAGCCCAATCGCCCAGGTGTCTATGCCAAGGTAGCAGAGTTCCTGGACTGGATCCATGACACTGTGCAGG
TCCGCTAG

Translation (445 aa):
MEIRCTEEGAGPGIFRMELGDQRQSISQSQRWCCLQRGCVILGVLGLLAGAGIASWLLVLYLWPAASPSI
SGTLQEEEMTLNCPGVSREEELLPSLPKTVSFRINGEDLLLQVQVRARPDWLLVCHEGWSPALGMHICKS
LGHIRLTQHKAVNLSDIKLNRSQEFAQLSARPGGLVEESWKPSANCPSGRIVSLKCSECGARPLASRIVG
GQAVASGRWPWQASVMLGSRHTCGASVLAPHWVVTAAHCMYSFRLSRLSSWRVHAGLVSHGAVRQHQGTM
VEKIIPHPLYSAQNHDYDVALLQLRTPINFSDTVGAVCLPAKEQHFPWGSQCWVSGWGHTDPSHTHSSDT
LQDTMVPLLSTYLCNSSCMYSGALTHRMLCAGYLDGRADACQGDSGGPLVCPSGDTWHLVGVVSWGRGCA
EPNRPGVYAKVAEFLDWIHDTVQVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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