NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25180.1 Public Mus musculus 11 Ddx52 23 108 98 CCDS HistoryNCBI Gene:78394Re-query CCDS DB by CCDS ID:25180.1Re-query CCDS DB by GeneID:78394See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049257.7 ENSMUSP00000048802.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049257.7Link to Ensembl Protein Viewer:ENSMUSP00000048802.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049257Re-query CCDS DB by Protein ID:ENSMUSP00000048802
Original member Current member NCBI NM_030096.2 NP_084372.2 Accepted alive Link to Nucleotide Sequence:NM_030096.2Link to Protein Sequence:NP_084372.2Re-query CCDS DB by Nucleotide ID:NM_030096Re-query CCDS DB by Protein ID:NP_084372Link to BLAST:NP_084372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084372.2 598 Q8K301 598 100% 0 0

Chromosomal Locations for CCDS 25180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83942178 83942264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83943243 83943441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83944536 83944669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83946105 83946290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83948445 83948588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83949583 83949694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83951290 83951362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83952112 83952315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83953227 83953317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83955081 83955203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83955289 83955439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83955972 83956047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83957466 83957537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83959447 83959533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83961750 83961807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGATTCCTACGACCTGTTTCGCCGGCTTGGAGCCGGCGCCAAGTTCGACGTGAAGCGCTTCTCAGCAG
ACGCTACTCGATTCCAGGTAGGAAAAAGGAAATTCGATTCCGAGTCTTTGGAGGTCCTGAAGGGACTAGA
CTTCTTCGGAAACAAGAAGTCCGTCTCAGATGAATGTGGAGCATTGCAAATACACCAGGAGCCCCCAAAT
GAGGAGAAAACACAAGGGGTCCTGTTGGAAAGGAGTAAGGAGCCCAAGAAGAAAAAGAGAAAGAAGATGA
CTTCAGAAGTTCCTGCTCAAGAAGACTTTGACGGTGGTATCCAGTGGACATCCTCTGTAGAAGCAAAGCT
TCAAGATGAAAAAGTCAGTGGAGAGAAGAAGTTAACTTCAGGAAAGTTGGAACATCTCAGAAAGGAAAAG
GTCAACTTCTTTCGGAACAAGCACAAGATACATGTCCAAGGAACTGATCTTCCTGACCCAATTGCTACAT
TTCAGCAACTTGACCAGGAATATAAAATCAATTCTAGATTGCTCCAGAATATTCTAGACGCAGGCTTCCA
AGTGCCCACACCAATTCAGATGCAAGCCATTCCAGTTATGCTGCATGGTCGGGAACTTCTGGCTTCTGCT
CCAACCGGATCTGGGAAGACGTTGGCATTTAGCATCCCCATTTTAATGCAGCTGAAACAACCAACAAATA
AAGGCTTTAGAGCCCTGGTTATATCCCCAACCCGAGAACTTGCAAGCCAGATTCACAGAGAATTAATTAA
AATATCTGAGGGTACAGGATTCAGAATACATATGATCCACAAAGCTGCAATAGCAGCTAAGAAATTTGGA
CCTAAATCATCTAAGAAGTTTGATATCCTTGTGACTACTCCAAATCGACTGATCTACTTGTTGAAGCAGG
ATCCACCAGGGATTGACCTAACAAATGTCGAGTGGCTGGTAGTAGATGAATCAGACAAACTGTTTGAAGA
TGGCAAAACTGGGTTTAGAGAGCAGCTGGCTTCCATTTTCCTGGCCTGCACATCGCCCAAGGTCAGAAGA
GCAATGTTCAGCGCAACTTTTGCGTACGACGTTGAACAGTGGTGCAAGCTCAACCTGGACAACGTCGTTT
CCGTGTCCATTGGAGCAAGGAATTCTGCAGTCGAAACTGTTGAACAAGAGCTTCTCTTTGTTGGATCTGA
GACTGGAAAACTTCTGGCCATGAGAGAACTTGTTAAAAAGGGTTTCAAGCCACCTGTTCTTGTTTTCGTT
CAGTCCATTGAAAGAGCTAAAGAACTTTTCCATGAGCTCATATATGAAGGTATTAATGTGGATGTCATTC
ATGCAGAAAGAACACAGCAGCAGCGAGATAACACAGTCCACAGCTTCAGAGCAGGAAAAATTTGGGTTCT
TATTTGTACAGCCTTACTTGCAAGAGGGATTGACTTTAAAGGCGTAAACCTGGTCATCAATTATGATTTT
CCCACCAGCTCAGTGGAGTACATCCATAGGATAGGTCGGACTGGAAGAGCAGGGAATAGGGGAAAGGCTG
TTACATTTTTCACTGAAGATGATAAACCATTACTAAGAAGTGTTGCCAATGTTATCCAGCAGGCTGGTTG
TCCTGTGCCCGAATACATAAAAGGTTTCCAGAAACTACTAAGCAAACAAAAGAAAAAAATGATTAAGAAG
CCGTTGGAAAGGGAGAGCATTTGTACAACTCCAAAGTACTTCTTAGAGCAAGCTAAACAGAAAAAGGTTG
CTGGCCAAAACAGCAAGAAGAAAGAAACTCTCAAAGAGAAAAGTTAA

Translation (598 aa):
MDSYDLFRRLGAGAKFDVKRFSADATRFQVGKRKFDSESLEVLKGLDFFGNKKSVSDECGALQIHQEPPN
EEKTQGVLLERSKEPKKKKRKKMTSEVPAQEDFDGGIQWTSSVEAKLQDEKVSGEKKLTSGKLEHLRKEK
VNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASA
PTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFG
PKSSKKFDILVTTPNRLIYLLKQDPPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRR
AMFSATFAYDVEQWCKLNLDNVVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFKPPVLVFV
QSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDF
PTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKK
PLERESICTTPKYFLEQAKQKKVAGQNSKKKETLKEKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH