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Report for CCDS35573.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35573.2 Public Mus musculus 1 Spats2l 23 108 98 CCDS HistoryNCBI Gene:67198Re-query CCDS DB by CCDS ID:35573.2Re-query CCDS DB by GeneID:67198See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 35573.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript data. The updated start codon is conserved in various species and has a weak Kozak signal. Transcript support that would allow use of this AUG is limited to mouse and rat, so this N-terminal extension could be rodent-specific. An alternative downstream start codon exists that is more widely conserved and has a strong Kozak signal. It is possible that leaky scanning by ribosomes may allow this downstream start codon to be used at least some of the time. Use of the downstream start codon would result in a protein that is 20 aa shorter at the N-terminus.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35573.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167085.7 ENSMUSP00000133054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167085.7Link to Ensembl Protein Viewer:ENSMUSP00000133054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167085Re-query CCDS DB by Protein ID:ENSMUSP00000133054
Original member Current member NCBI NM_144882.4 NP_659131.2 Accepted alive Link to Nucleotide Sequence:NM_144882.4Link to Protein Sequence:NP_659131.2Re-query CCDS DB by Nucleotide ID:NM_144882Re-query CCDS DB by Protein ID:NP_659131Link to BLAST:NP_659131.2

Chromosomal Locations for CCDS 35573.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 57832100 57832137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57855464 57855524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57879508 57879616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57882706 57882755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57885703 57885949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57900634 57900840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57902089 57902224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57923366 57923424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57937912 57938021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57940373 57940475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57943021 57943241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57946068 57946463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCTGGAACACAGGAAACCGGCGCTTCGGCAAGCAAGGCTTATACCCCTAGAAGGAAGATGGCTGAAC
TCAACACTCATGTGAACATCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACAAAAGCAATAA
TGAAATCGTGCTGGTACTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTACAGGCCTTTGTGGATGGC
AGTGCTATTCAAGTTCTTAAAGAATGGAACATGACGGGAAAGAAGAAGAATAATAAAAGGAAGAGAAGCA
AATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGTGGAGAGGCCAGAGGTGGGGCCCCTGCA
GCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCTGCGAAAAGGACAGCTCATCCCCTGACTCT
ACCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCGATACTGGAGGAACCTCCAAGGGCTC
AGCGTGGGGTCACAGAAGGCGGCAGACTACTGCAGCAGAAAATGTCCTTAGATGGGAACCCCAGAGCGAT
TCATGGACCATCAGAGAGGTCAGATGGCCCACAGTGGTCAGCTGGGCAGCCTTGTAACCCAAGCAAGCCT
AAGGCAAAAACATCTCCTGTTAAGTCCAATGCCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGCTGG
CAAAGAAAAGAGGCCCAAATATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTTCTCTGACGAG
ATACCGCGTCATGATCAAGGAAGAAGTGGACAGTTCCGTGAAGAAGATCAAAGCAGCATTTGCTGAGCTA
CACAACTGCATCATTGACAAAGAAGTTTCACTGATGGCAGAAATGGACAAAGTTAAAGAAGAAGCCATGG
ACATCCTGACTGCCCGTCAGAAGAAAGCAGAGGAGCTGAAGAGACTGACTGACCTAGCCAGTCAGATGGC
AGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAGTATGACGAGGAG
CTGGGGAAGGCTGCCCGCTTCTCCTGTGACATTGAACAACTGAAAGCCCAAATCCTGATCTGTGGAGAAA
TTACACATCCAAAGAACAGCTACTCCTCAAGAACTCCCTGCAGCTCCCTGCTGCCTCTGCTGAACACTCA
TGCGGTAGCTTCCGGGAAACAGGGGAATTTTGCCCGGAAGTCATCCGGTCACAACAAGCCCTCTGAGGGG
AAAGCAGCAAACCCCAAAATGGTGAGCGGACTTGCCAACACTGCCGATGCGTGTCACCAGACCATGCCCA
CTAACAAGCAGCAGAATGGACCTTCCAGCCAAAGACGAAGATTTAATCCACAGTATCACAACAGGCTAAA
TGGTCCAGCCAAGTCACAGGGTGGTGGTAATGAAGCGGATCCCATGGCGAAGAGCAACAGCCGCCATGAA
CACAGAAGACAGCCACATAATGGTTTCCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAGGCCCCCT
TGGGGACAAAGGCCCCAGAGGCCCCCCCACATTCTGAAAAGGCCCGTCGAAGGCAGCATGCTGCAGACAA
CTTAGAGGCCAGGCCTTTCCGGGGTAATGTTAGTAGGGTTTCACAGTGCAATCTTTGTCCCTCTAGAATA
GAAGTTTCCACGGAGGCCACGGTCCTCTCAGTCCCCGCTGTGACGTTGGTGGCCTGA

Translation (578 aa):
MAGTQETGASASKAYTPRRKMAELNTHVNIKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDG
SAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNKDAKDKVERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDS
TREKLALTPREKKISILEEPPRAQRGVTEGGRLLQQKMSLDGNPRAIHGPSERSDGPQWSAGQPCNPSKP
KAKTSPVKSNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAEL
HNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEE
LGKAARFSCDIEQLKAQILICGEITHPKNSYSSRTPCSSLLPLLNTHAVASGKQGNFARKSSGHNKPSEG
KAANPKMVSGLANTADACHQTMPTNKQQNGPSSQRRRFNPQYHNRLNGPAKSQGGGNEADPMAKSNSRHE
HRRQPHNGFRPKNKGGAKNQEAPLGTKAPEAPPHSEKARRRQHAADNLEARPFRGNVSRVSQCNLCPSRI
EVSTEATVLSVPAVTLVA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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