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Report for CCDS48267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48267.1 Public Mus musculus 1 Spats2l 23 108 98 CCDS HistoryNCBI Gene:67198Re-query CCDS DB by CCDS ID:48267.1Re-query CCDS DB by GeneID:67198See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170139.7 ENSMUSP00000127598.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170139.7Link to Ensembl Protein Viewer:ENSMUSP00000127598.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170139Re-query CCDS DB by Protein ID:ENSMUSP00000127598
Original member Current member EBI ENSMUST00000169772.2 ENSMUSP00000132975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169772.2Link to Ensembl Protein Viewer:ENSMUSP00000132975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169772Re-query CCDS DB by Protein ID:ENSMUSP00000132975
Original member Current member NCBI NM_001164566.1 NP_001158038.1 Accepted alive Link to Nucleotide Sequence:NM_001164566.1Link to Protein Sequence:NP_001158038.1Re-query CCDS DB by Nucleotide ID:NM_001164566Re-query CCDS DB by Protein ID:NP_001158038Link to BLAST:NP_001158038.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158038.1 557 Q91WJ7-2 557 100% 0 0

Chromosomal Locations for CCDS 48267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 57855486 57855524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57879508 57879616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57882706 57882755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57885703 57885949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57900634 57900840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57902089 57902224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57923366 57923424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57937912 57938021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57940373 57940475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57943021 57943241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 57946071 57946463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCTGAACTCAACACTCATGTGAACATCAAAGAGAAGATCTACGCAGTTAGATCAGTTGTTCCGAACA
AAAGCAATAATGAAATCGTGCTGGTACTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTACAGGCCTT
TGTGGATGGCAGTGCTATTCAAGTTCTTAAAGAATGGAACATGACGGGAAAGAAGAAGAATAATAAAAGG
AAGAGAAGCAAATCCAAGCAGCATCAAGGCAACAAAGATGCTAAGGACAAGGTGGAGAGGCCAGAGGTGG
GGCCCCTGCAGCCCCAGGCACCACTGGTACAAAATGGTCACATGAATGGCTGCGAAAAGGACAGCTCATC
CCCTGACTCTACCAGAGAAAAACTGGCCCTCACACCACGTGAGAAAAAGATCTCGATACTGGAGGAACCT
CCAAGGGCTCAGCGTGGGGTCACAGAAGGCGGCAGACTACTGCAGCAGAAAATGTCCTTAGATGGGAACC
CCAGAGCGATTCATGGACCATCAGAGAGGTCAGATGGCCCACAGTGGTCAGCTGGGCAGCCTTGTAACCC
AAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATGCCCCTGCAGCTCATCTTGAAATAAAGCCA
GATGAGCTGGCAAAGAAAAGAGGCCCAAATATTGAGAAATCGGTGAAGGATCTGCAGCGCTGCACTGTTT
CTCTGACGAGATACCGCGTCATGATCAAGGAAGAAGTGGACAGTTCCGTGAAGAAGATCAAAGCAGCATT
TGCTGAGCTACACAACTGCATCATTGACAAAGAAGTTTCACTGATGGCAGAAATGGACAAAGTTAAAGAA
GAAGCCATGGACATCCTGACTGCCCGTCAGAAGAAAGCAGAGGAGCTGAAGAGACTGACTGACCTAGCCA
GTCAGATGGCAGAGATGCAGCTGGCCGAACTCAGAGCTGAAATTAAGCACTTTGTCAGCGAACGCAAGTA
TGACGAGGAGCTGGGGAAGGCTGCCCGCTTCTCCTGTGACATTGAACAACTGAAAGCCCAAATCCTGATC
TGTGGAGAAATTACACATCCAAAGAACAGCTACTCCTCAAGAACTCCCTGCAGCTCCCTGCTGCCTCTGC
TGAACACTCATGCGGTAGCTTCCGGGAAACAGGGGAATTTTGCCCGGAAGTCATCCGGTCACAACAAGCC
CTCTGAGGGGAAAGCAGCAAACCCCAAAATGGTGAGCGGACTTGCCAACACTGCCGATGCGTGTCACCAG
ACCATGCCCACTAACAAGCAGAATGGACCTTCCAGCCAAAGACGAAGATTTAATCCACAGTATCACAACA
GGCTAAATGGTCCAGCCAAGTCACAGGGTGGTGGTAATGAAGCGGATCCCATGGCGAAGAGCAACAGCCG
CCATGAACACAGAAGACAGCCACATAATGGTTTCCGTCCCAAAAACAAAGGTGGTGCCAAAAACCAAGAG
GCCCCCTTGGGGACAAAGGCCCCAGAGGCCCCCCCACATTCTGAAAAGGCCCGTCGAAGGCAGCATGCTG
CAGACAACTTAGAGGCCAGGCCTTTCCGGGGTAATGTTAGTAGGGTTTCACAGTGCAATCTTTGTCCCTC
TAGAATAGAAGTTTCCACGGAGGCCACGGTCCTCTCAGTCCCCGCTGTGACGTTGGTGGCCTGA

Translation (557 aa):
MAELNTHVNIKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKR
KRSKSKQHQGNKDAKDKVERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSTREKLALTPREKKISILEEP
PRAQRGVTEGGRLLQQKMSLDGNPRAIHGPSERSDGPQWSAGQPCNPSKPKAKTSPVKSNAPAAHLEIKP
DELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKE
EAMDILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILI
CGEITHPKNSYSSRTPCSSLLPLLNTHAVASGKQGNFARKSSGHNKPSEGKAANPKMVSGLANTADACHQ
TMPTNKQNGPSSQRRRFNPQYHNRLNGPAKSQGGGNEADPMAKSNSRHEHRRQPHNGFRPKNKGGAKNQE
APLGTKAPEAPPHSEKARRRQHAADNLEARPFRGNVSRVSQCNLCPSRIEVSTEATVLSVPAVTLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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