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Report for CCDS52962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52962.1 Public Mus musculus 9 Vill 23 108 98 CCDS HistoryNCBI Gene:22351Re-query CCDS DB by CCDS ID:52962.1Re-query CCDS DB by GeneID:22351See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051386.12 ENSMUSP00000061731.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051386.12Link to Ensembl Protein Viewer:ENSMUSP00000061731.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051386Re-query CCDS DB by Protein ID:ENSMUSP00000061731
Original member Current member NCBI NM_001164567.1 NP_001158039.1 Accepted alive Link to Nucleotide Sequence:NM_001164567.1Link to Protein Sequence:NP_001158039.1Re-query CCDS DB by Nucleotide ID:NM_001164567Re-query CCDS DB by Protein ID:NP_001158039Link to BLAST:NP_001158039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158039.1 859 Q91YD6-1 859 99.7672% 0 2

Chromosomal Locations for CCDS 52962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119057789 119057854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119058005 119058079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119058311 119058516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119060345 119060453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119061477 119061587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119061895 119062094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119062442 119062520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119062606 119062704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119063248 119063383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119063602 119063702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119065459 119065596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119065860 119066018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119066701 119066880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119067411 119067556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119068312 119068456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119069883 119070068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119070278 119070349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119070557 119070814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119071134 119071247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2580 nt):
ATGGACATCAACCAGGACCTCCCAGCCATCGACAGCCACAGAGCCTTGCAAATATGGATTACTGAGAACC
TAAAGATGCTGCCATTGCCTGAAAGGGCTCATGGGAATTTCTTTGAAGAATGCTGCTATGTCGTCCTTCA
TGTCCCTCAGAGTCCAAAAGCTACCCAGGGAGGATTCAGTGACCTGCACTACTGGATTGGAAAGGATGCC
AGCGCAGAAGCCCGGGAGGCTGCGGTCTCCTTTGTGCAATGTCTGCAGGAGGACCTAGGAGACCAGACTG
TGCTGCACCGAGAGTCACAGGGCCACGAGTCCGACTGCTTCCACAGCTATTTCCACCCTGGAGTCATCTA
CAGGAAGGGAGGCAGAGACTCTGCTCTCAAGTTTGCGGAGACCAACATGTACAATGTCCAGCGACTGCTT
CACATCAGGGGAAGGAAGCACGTGTCTGCCACTGAGGTGGCCTTGTCCTGGAACAGCTTTAACAAGGGGG
ACATCTTCCTGTTGGACCTGGGCAAGGTGATGATCCAGTGGAATGGACCCAAAGCCAGCATTTCTGAGAA
AGCACGGGCTCTGACCCTGACTTGCAACCTCAGAGACAGGGAGCGAGGTGGCCGTGCCCAAATTGCTGTG
GTAGATGCGGAGAATGAAGCCACCAACCTTCTGCGCATCATGGAGGCTGTGCTGGGCTGCAGATCAGGCA
GCCTGTGTCCCTCTGTACCCAGCAACAGTGTTAGCCAGCTACAAAAGGCCAATGTCCGCCTCTACCATGT
CTGTGAGAAGGGGACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTCCTGCAA
GAGGACGGTTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCC
CCCAGGAGAAGAAGGCTGCCCTCAGCAGGGCTGTGGGCTTCATCCAGGCCAAGGGTTACCCGAACTACAC
CAATGTGGAGGTGGTGAACGACGGCGCGGAGTCCACAGCTTTCCAACAGCTCTTCTGGTCTTGGTCGAAG
GAGCTAGATAGGAAAAAACACCCAGAGAAGAGTAAACTGGTGCAGGGAAACCTGGAGGTAGGCAAGCTTC
ACACCCAGCCTGAGCTCGCGGCCCAGCTCAGAATGGTGGACGACGGCTCTGGGAAGGTGGAGGTGTGGTA
CATCCAGGACTTACAAAGACAGCCTGTACATCCCAAGTACTATGGCCAGTTGTGCTCAGGAAACTGCTAC
CTTGTCCTCTACACATACCAGAAACTGGGCTGTGTCCAGTACCTCCTGTACCTATGGCAGGGCCACCAAA
GCACTGTAGAAGACACCAAGGCCCTGAACTGCAGTGCTGAAGAGTTGGACCTCATGCACCAGGGTGCACT
GGCGCAGGGGCATGTGACCATGGGCAGTGAGCCTCCCCACTTCCTAGCCATCTTCCAGGGGCGGCTGGTG
GTCTTCCAGGGGAATGCAGGCAACAAAGGGGAAAGACCACCAGTATCCGACACCAGGCTTTTCCACGTGC
AAGGGACCGAGAGCCACAACACCAGAACTATGGAGGTGCCGGCCCGTGCCTCCTCCCTCACTTCTGGTGA
CGTCTTCTTTCTGATCACAAGTCATGTTTGCTATCTCTGGTTTGGGAAGGGCTGTCATGGGGACCAACGT
GAGATGGCGCGGACGGTGGTCAGTGTCTTCCCAGGGAATAACAAGGAGACAGTGCTGGAGGGTCAGGAGC
CTCTCTACTTCTGGGAAGCCCTCGGAGGCCGGGCCCCCTATCCCAGTAACAAGAGGCTTCCCGAGGAGGT
GTGGAGCATCCAGCCCCGACTGTTCGAGTGCTCCAGTCACGCAGGCTGCCTGGTCCTCACGGAAGTGCTG
TTCTTTGGCCAAGAGGACTTGGACAAGTATGACATCATGTTACTAGACACCTGTCAGGAGATCTTCCTGT
GGCTTGGGGAAGCTGCAGGTGAATGGAAGAAAGAAGCAGTGGCCTGGGGCCTTGAGTACCTGAGGACTCA
CCCAGCAGAGAGGAGCCTGGCCACACCCATCTTTGTGGTCAAGCAAGGCCATGAGCCAGCCACCTTTACC
GGGTGGTTTGTCACCTGGGACCCTTACAAGTGGATGAACAGCCAGTCCTACGAGGAGATGGTGGGGAACA
GCCTGGGACCGGGATCTGCAATCTCTGAGATGACAGCAGAAGTCCATAACTTCCAGCTAACTCCACGGCT
GAGTGATAACAAGGCAGGTCACCCGGCACTGCAGGCCTTCAAGGGTTCCCAGGACAGTCCAGAGAATGAG
CTGGGGCTGGACCTCAGGGTGGATGGCGCAAACCCCAGCATGAACCACACCAGCAGCTGCAGTGACTCAA
TGGTCAATGGGAGCCTGCCCCGGGAAAGGCTGATGCACCAGGCACTGGAGGACCTGCCACCGGGTGTGGA
CCCAGCCCGTAAGGAGTTCTATCTCTCAGACTCTGATTTCCAAGACATCTTCGGGAAATCCAAGGAGGAG
TTCTACAGCATGGCCAAGTGGAAGCAGCAGCAAGCGAAAAAGAAGCTGGGCTTCTTCTGA

Translation (859 aa):
MDINQDLPAIDSHRALQIWITENLKMLPLPERAHGNFFEECCYVVLHVPQSPKATQGGFSDLHYWIGKDA
SAEAREAAVSFVQCLQEDLGDQTVLHRESQGHESDCFHSYFHPGVIYRKGGRDSALKFAETNMYNVQRLL
HIRGRKHVSATEVALSWNSFNKGDIFLLDLGKVMIQWNGPKASISEKARALTLTCNLRDRERGGRAQIAV
VDAENEATNLLRIMEAVLGCRSGSLCPSVPSNSVSQLQKANVRLYHVCEKGTDLVVQELATRPLTQDLLQ
EDGCYLLDQGGFKIYMWQGRKSSPQEKKAALSRAVGFIQAKGYPNYTNVEVVNDGAESTAFQQLFWSWSK
ELDRKKHPEKSKLVQGNLEVGKLHTQPELAAQLRMVDDGSGKVEVWYIQDLQRQPVHPKYYGQLCSGNCY
LVLYTYQKLGCVQYLLYLWQGHQSTVEDTKALNCSAEELDLMHQGALAQGHVTMGSEPPHFLAIFQGRLV
VFQGNAGNKGERPPVSDTRLFHVQGTESHNTRTMEVPARASSLTSGDVFFLITSHVCYLWFGKGCHGDQR
EMARTVVSVFPGNNKETVLEGQEPLYFWEALGGRAPYPSNKRLPEEVWSIQPRLFECSSHAGCLVLTEVL
FFGQEDLDKYDIMLLDTCQEIFLWLGEAAGEWKKEAVAWGLEYLRTHPAERSLATPIFVVKQGHEPATFT
GWFVTWDPYKWMNSQSYEEMVGNSLGPGSAISEMTAEVHNFQLTPRLSDNKAGHPALQAFKGSQDSPENE
LGLDLRVDGANPSMNHTSSCSDSMVNGSLPRERLMHQALEDLPPGVDPARKEFYLSDSDFQDIFGKSKEE
FYSMAKWKQQQAKKKLGFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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