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Report for CCDS49780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49780.1 Public Mus musculus 16 Smpd4 23 108 98 CCDS HistoryNCBI Gene:77626Re-query CCDS DB by CCDS ID:49780.1Re-query CCDS DB by GeneID:77626See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090159.12 ENSMUSP00000087620.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090159.12Link to Ensembl Protein Viewer:ENSMUSP00000087620.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090159Re-query CCDS DB by Protein ID:ENSMUSP00000087620
Original member NCBI NM_001164609.1 NP_001158081.1 Updated not alive Link to Nucleotide Sequence:NM_001164609.1Link to Protein Sequence:NP_001158081.1Re-query CCDS DB by Nucleotide ID:NM_001164609Re-query CCDS DB by Protein ID:NP_001158081
Current member NCBI NM_001164609.2 NP_001158081.1 Accepted alive Link to Nucleotide Sequence:NM_001164609.2Link to Protein Sequence:NP_001158081.1Re-query CCDS DB by Nucleotide ID:NM_001164609Re-query CCDS DB by Protein ID:NP_001158081Link to BLAST:NP_001158081.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158081.1 807 Q6ZPR5-4 807 100% 0 0

Chromosomal Locations for CCDS 49780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17621487 17621525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17623905 17623991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17625720 17625862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17625944 17626019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17626430 17626538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17626639 17626691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17626802 17626953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17629069 17629198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17631986 17632057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17638496 17638641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17639274 17639364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17639745 17639845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17639969 17640007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17640126 17640289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17640865 17641061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17641362 17641595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17641698 17641829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17642169 17642297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17642474 17642803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGGCGTTCCCTCACCTACAACAGCCTAGTTTCCTTCTGGCTAGCCTGAAAGCTGACTCTATAAATAAGC
CCTTTGCACAACGTTGCCAAGATTTGGTGAAAGTCATTGAGGATTTTCCAGCCAAGGAATTGCATGCCGT
CTTCCCATGGCTGGTGGAAAGCATCTTTGGCAGCCTGGATGGTGTCCTTGTTGGTTGGAATCTCCGATGC
CTACAGGGACGTGTGAACCCTGTGGAGTACAGCACAGCGATGGAATTTCTAGACCCAAGTGGTCCAATGA
TGAAGTTGGTTTATAAACTTCAAGCTGAAGACTATAACTTTGATTTTCCTGTCTCCTGTCTTCCTGGCCC
TGTGAAGGCATCCATTCAAGAGAATGTCCTCCCTGACAGTCCTCTGTACCACAACAAAGTCCAGTTTCCC
CCGACCGGAGGCCTTGGCCTGAACCTGGCCCTCAATCCATTTGAATACTATATGTTCTACTTTGCTTTGA
GCCTCATCTCTCAAAAGCCAATGTCTATGACCCTCCATGTCCGTACTTCGGACTGTGCCTATTTCACCCT
GGTGGATAGGTACCTATCATGGTTCCTACCCACTGAAGGCAGCGTACCTCCACCACTCTGCTCCAGTCCA
GGAGGCTCCAGCCCCTCACCAGCTCCCAGAACACCAGCCATGCCCTTTGCCTCCTATGGCCTCCACACTA
GCCTCTTGAAGCGACACATCTCTCATCAGACATCTGTGAATGCAGACCCTGCATCCCATGAGATCTGGCG
GTCAGAAACTCTCCTCCAGGTTTTTGTGGAAATGTGGCTTCATCATTACTCCCTGGAGATGTACCAAAAA
ATGCAGTCCCCTCATGCCAAGGAGTCCTTCACGCCTACTGAAGAGCACGTGCTGGTGGTACGCCTGCTGC
TGAAGCACCTGCATGCCTTTGCCAACAGCCTGAAGCCAGATCAGGCTTCGCCATCTGCACACTCCCATGC
CACCAGTCCGCTGGAGGAATTCAAACGGGCCGCAGTGCCTCGCTTTGTCCAGCAGAAGCTGTACGTCTTC
CTGCAGCACTGTTTTGGCCACTGGCCTCTGGATGCAACCTTCAGAGCTGTCTTGGAGATGTGGCTGAGCT
ACCTGCAGCCATGGAGGTATGCCCCTGAGAAACAGGCTCAGGGCAGCGATCCCCAGCCACGGTGTGTGTC
AGAGAAGTGCCTGGCTCCATGGTCACCCTATCAGCACAGAGGACTGAGGGCACCCTTCATCCAGGAAAAC
CTGCTGATGTACACCAAGCTGTTTGTGAGCTTTCTGAACCGTGCCCTACGCACAGACCTTGTCAGCCCCA
AGAATGCACTCATGGTCTTCCGAGTGGCTAAGGTCTTTGCCCAGCCCAACCTGGCTGAGATGATCCAGAA
AGGTGAGCAGCTGTTCCTGGAGCCGGAGCTCATCATCCCCCACCGCCAACACCGGCTCTTCACAGTCACC
ACCAGCTTCCTGTCACCATGGCCCCCTGTTGTGACAGATGCCTCCTTCAAGGTGAAGAGCCATGTCTATA
GCCTAGAGGGCCAAGACTGCAAATATACCCCAATGTTTGGTCCTGAAATCCGAACCCTGGTCTTGCGCCT
TGCTCAGCTCATCACACAGGCCAAGCAGACTGCCAAGTCCATCTCTGATCAGTATGTGGAAAGCCCAACT
GGCCGCTCCTTCCTGTCATGGCTGACCTTTGGCCTCACAGACACAAATAGCTGCTACCCAGCCAATGACC
TGGATGAAATAGGTCAGGACAGCATCCGCAAGACAGACGAGTACTTAGAAAAGGCCCTGGAGTACCTGCG
CCAGATATTCCGGCTCAGCGAAGCCCAGCTGGCCCAGCTCACGCTTGCCCTGGGGAGTGCTCGGGACGAG
AATGGGAAGCAGCAGCTCCCAGATTGCATTGTGGGGGAAGAAGGACTCATCCTTACACCCTTGGGCCGCT
ACCAGATCATTAATGGTCTGCGAAGGTTCGAGATTGAGTACCAGGGAGACTTAGAGCTGCAGCCCATCCG
GAGCTACGAAATCACCAGTCTGGTCCGTGCACTCTTCCGGCTGTCCTCTGCCATCAACCGTAGATTTGCA
GGCCAGATGGCAGCTCTGTGCTCCCGGAATGACTTCCTTGGCAGCTTCTGTCGCTACCACCTCACTGAGC
CTGCCTTGAGCAACAGACATCTGCTGAGCCCTGTAGGGCGGAGGCAGGTCACCAATCCTGCACGGGGCCC
CAGGCTCAGCCTCCGTTTCCTGGGCAGTTACCGGACACTGCTCCTGCTCCTGATGGCCTTCTTTGTGGCT
TCTCTGTTCTGCATTGGGCCCCTGTCCTGCTCCTTGCTCCTGGTCCTAGGATACGTCCTCTATGCCATAG
CTATGACACTGCTCACTGAACGGGGGAAGCTGCACCAGCTCTGA

Translation (807 aa):
MAFPHLQQPSFLLASLKADSINKPFAQRCQDLVKVIEDFPAKELHAVFPWLVESIFGSLDGVLVGWNLRC
LQGRVNPVEYSTAMEFLDPSGPMMKLVYKLQAEDYNFDFPVSCLPGPVKASIQENVLPDSPLYHNKVQFP
PTGGLGLNLALNPFEYYMFYFALSLISQKPMSMTLHVRTSDCAYFTLVDRYLSWFLPTEGSVPPPLCSSP
GGSSPSPAPRTPAMPFASYGLHTSLLKRHISHQTSVNADPASHEIWRSETLLQVFVEMWLHHYSLEMYQK
MQSPHAKESFTPTEEHVLVVRLLLKHLHAFANSLKPDQASPSAHSHATSPLEEFKRAAVPRFVQQKLYVF
LQHCFGHWPLDATFRAVLEMWLSYLQPWRYAPEKQAQGSDPQPRCVSEKCLAPWSPYQHRGLRAPFIQEN
LLMYTKLFVSFLNRALRTDLVSPKNALMVFRVAKVFAQPNLAEMIQKGEQLFLEPELIIPHRQHRLFTVT
TSFLSPWPPVVTDASFKVKSHVYSLEGQDCKYTPMFGPEIRTLVLRLAQLITQAKQTAKSISDQYVESPT
GRSFLSWLTFGLTDTNSCYPANDLDEIGQDSIRKTDEYLEKALEYLRQIFRLSEAQLAQLTLALGSARDE
NGKQQLPDCIVGEEGLILTPLGRYQIINGLRRFEIEYQGDLELQPIRSYEITSLVRALFRLSSAINRRFA
GQMAALCSRNDFLGSFCRYHLTEPALSNRHLLSPVGRRQVTNPARGPRLSLRFLGSYRTLLLLLMAFFVA
SLFCIGPLSCSLLLVLGYVLYAIAMTLLTERGKLHQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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