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Report for CCDS52738.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52738.1 Public Mus musculus 9 Ccdc159 23 108 98 CCDS HistoryNCBI Gene:67119Re-query CCDS DB by CCDS ID:52738.1Re-query CCDS DB by GeneID:67119See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52738.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170304.8 ENSMUSP00000126474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170304.8Link to Ensembl Protein Viewer:ENSMUSP00000126474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170304Re-query CCDS DB by Protein ID:ENSMUSP00000126474
Original member Current member NCBI NM_001164614.1 NP_001158086.1 Accepted alive Link to Nucleotide Sequence:NM_001164614.1Link to Protein Sequence:NP_001158086.1Re-query CCDS DB by Nucleotide ID:NM_001164614Re-query CCDS DB by Protein ID:NP_001158086Link to BLAST:NP_001158086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158086.1 411 Q8C963-1 411 100% 0 0

Chromosomal Locations for CCDS 52738.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21927708 21927742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21929093 21929226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21929308 21929534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21931310 21931343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21931699 21931787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21931865 21931946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21932804 21932990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21933546 21933613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21933696 21933772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21934118 21934233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21934435 21934517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21935530 21935628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21935796 21935800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGGAGAGCATGAACGGGTGGTATGCTGTAGTAGTGACTCTCTTTTGGCTGGCCTATCCCGGGACTCTG
ACGACTGTGTTTCTCATCTCTGCACACCTCCGTTACTCGCCATCACATCTTGGGCTGCTAAGGAGAGGAG
CCAGTACTCACCACCTCCTGGAGAGCCTGGGCCCTCCTCAGACAAGGCTTTGGACTGTATGACCCACTGG
TCCAGGGTTTTGGAGCCTGAGATCGTGAACACTGCTTCTGAACAAGCAGGGAAGTCTGGGGCCTGGGAGA
AGGAGTGGGACTCAGAACCACAGCCTCATGAGGGTACACCCTGTTCCAGCTCAGACGTGAACAAGGACCA
TTATCATGACCAGGACCTTGTGAAGAGGAACCACTGTGTAGCCAAGAAGTCCCTGGAGCCCAGCTCAGCC
AAAGTAAAAGTTAAGAACACCATGATAATTCCTGACTCTCAGAAGCTCTTGCGATGCGAACTGGAGTCTC
TCAGGAGCCAGCTGCAGGCTCAGAGCAAGGCTTTCGAGTTCCTGAATCACTCTGTGACCATGCTGGAGAA
GGAGAGCTGCCTACAGCAGATCAAGATTCAGCAGCTTGAAGAAGTGCTGAGCCCCACGAGCCGCCAAGGA
GAGAAGTATGGCCGTAAGTGGAGCACAGAGCAGGAGCTGTATGGGGCCCTGGCTCAAGGCCTGCAGGGGT
TGCAGAAGACACTGAAGGAAGGCGAGGAGCTGCAACGGGCCCGTACCACTCGCTGCCTGCAGCTGTTGGC
CCGGGAGATCCGGGACAGCAAGAAGTTCCTGTGGGAGGAACTGGAGCTGGTGCGGGAAGAGGTGACTTTC
ATCTATCAGAAACTCCAGGACCAGGAGGATGAGATCTCAGAGAATCTCCTGAATATCCAGAAGATGCAGA
AAACTCAGGTGAAGTGCCGCAAGGTTCTTACCAAGATGAAGCAGCAGGCATACGATTCATGGCCAGAAGC
CGAGGGGGTGCCCACAGAAGGCAACGGTTGCTGTAAGGATGACCTCCAGAAGGAGCTGGGTGACATATGG
TCTGCCGTTCACAGTCTGCAGAGCTCCATTGACTGTCTTGCTTTGTCAATGGGCACCAGACCCAGGGCCT
CCAGCCTCAGAGGCCAGAAAGGACACCAGTGCAAGAGCTCTCAGTGCCCCTCCTGGGACTCCGATTCAGA
CTGGGAGAGACCTTTCAGCAAGAGTGGATCCTACCCTCCCGCTTGA

Translation (411 aa):
MGEHERVVCCSSDSLLAGLSRDSDDCVSHLCTPPLLAITSWAAKERSQYSPPPGEPGPSSDKALDCMTHW
SRVLEPEIVNTASEQAGKSGAWEKEWDSEPQPHEGTPCSSSDVNKDHYHDQDLVKRNHCVAKKSLEPSSA
KVKVKNTMIIPDSQKLLRCELESLRSQLQAQSKAFEFLNHSVTMLEKESCLQQIKIQQLEEVLSPTSRQG
EKYGRKWSTEQELYGALAQGLQGLQKTLKEGEELQRARTTRCLQLLAREIRDSKKFLWEELELVREEVTF
IYQKLQDQEDEISENLLNIQKMQKTQVKCRKVLTKMKQQAYDSWPEAEGVPTEGNGCCKDDLQKELGDIW
SAVHSLQSSIDCLALSMGTRPRASSLRGQKGHQCKSSQCPSWDSDSDWERPFSKSGSYPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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