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Report for CCDS48743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48743.1 Public Mus musculus 11 Ccdc157 23 108 98 CCDS HistoryNCBI Gene:216516Re-query CCDS DB by CCDS ID:48743.1Re-query CCDS DB by GeneID:216516See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093381.10 ENSMUSP00000091074.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093381.10Link to Ensembl Protein Viewer:ENSMUSP00000091074.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093381Re-query CCDS DB by Protein ID:ENSMUSP00000091074
Original member Current member NCBI NM_001164620.1 NP_001158092.1 Accepted alive Link to Nucleotide Sequence:NM_001164620.1Link to Protein Sequence:NP_001158092.1Re-query CCDS DB by Nucleotide ID:NM_001164620Re-query CCDS DB by Protein ID:NP_001158092Link to BLAST:NP_001158092.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158092.1 718 Q5SPX1-1 718 100% 0 0

Chromosomal Locations for CCDS 48743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 4143689 4143935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4144026 4144114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4144510 4144649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4146234 4146402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4146542 4146718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4147169 4147359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4147700 4147777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4148439 4149084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4149931 4150102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 4151672 4151919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGGCACACCTGCTAGGCAGCCAGGCTTGTATGGACAGCCTGCGCAAGGACCTCACCGACCTGCAGGGCA
CCATTGTGGATGTGTTCTCTCGTGCTGGGCCTGTGCGCTTCCCCTCCTGGAAGTTCCCTGATCGTGTGGC
CTGCGACCTTGACATGGTGGCCCTTCTGGAGCACTATGACCATGTGCCAGGTGACCCTGAGTTCACACAG
TTGTCCCATGCCGTGCTGCTGGAGCTGGTCATTGACAGGCTCCTGCTGCTGCTTCAGAGTTGTGCCAGCT
ACTTGGAAAACCTCAGTGTGGAGCAGATGATGCCTCCTGCCCGGGCTGCAGGGCCATGCATGTCCGTGGG
ACTTACAGTACGGCGCTTCTGGAGCAACCTGCTTAGGCTGGGCCTGCTCTACCAGCAGGCAGTCCCCCAG
AAAAGAGCAAACCAAGGGGAGATTTCTATCACCAAGCCCACAGCTAAGGGTGAACCAGCCAGGAGCCCGG
AATGTATGACTGCCAAGTTCATCAAGCCCCCTTCCCCGGTGCCAGGCTTGCCTTTGATCTGCCAAGGGTT
GCAGAGCATCCCTGTCAGAGTCTCCCTGCGGAGCCCAGGTGGAACCTCTGAGAAAACTAAGAGCGTCTAC
TCCCAGACCGTCGAGACAGCCTTGGTGCCCTGTGATGCTTGCACCAGTGTCCAGGGCAGCTTGTGGGAGG
TGGGCAAGGTTGTTATCAGCCTGTGTCAGAGCCAAAACTTGCCTTCATCCTTGGGCCAGTTCCAGAAGTT
GGTGAAGGACAGCCTGGGGCTTAAACCACTGCCAGCTGCCACCGTGGGCCACTGGGCAGCAGAGCAGAGC
AAAGACCTGACTCGTCTCAATAAACATGTGGGGGCCCTCACCCAGCTTGTTGGGCCCCTCAGGGCTCAGC
TGGAAGACGCTGAGGGGCAGAAGGATGGGCTGAGGAAGCAGGTGAGCAAGCTGGAGCAGGCCCTGCAGCA
GGAGCAAGGGCAGCGGCAGCGGCAGACAGAGGAGGCTGAGCGGACCCTGGCCAAGTGCGAGCATGACAGG
CATCAGCTGCTCACAGAAACATGTGACCTAAAGACAAAGGTGGCCGTTTTGGAGGGAGACCTGAAGCAGC
AGCAGAAGTCCATACAGGCCATGGAGGCCAAGGCTCAGCAGCTGGAGGAGGAAGGGGAGCGTAGGGCAGC
AGCTGAGAGGCAGGTGCAGCAGCTGGAGGAGCAAGTGCAGCTGCTGGCGGGGCGGCTGGACGGGGCTAGC
CAGCAGATCCGCTGGGCCAGCACGGAGCTGGACAAGGAGAAGGCCCGCGTCGACAGCATGGTCCGTCATC
AGGAGTCCCTGCAGGCCAAGCAGAGGACTTTGCTACAGCAGCTGGACTGTCTGGACCAGGAGCGGGAAGA
GCTGCGGGGAAGTCTGGATGAGGCTGAGGCCCAGCGGTCTGAGTTGGAGGAGCAGCTGCAGAGCCTCCAG
AGCGATAGGGAGCAGGAACAGTGCCAGCTACAGGCCCAGCAGGAACTGCTGCAGAGCCTGCAGCAGGAGA
AACAGGACCTGGAACAGGTGACTACAGACCTGCAGCTGACCATCTCTGAGCTACGGCAGCAGCTGGAGGA
GCTGAAGGAACGGGAGCGGCTGCTGGTGGCCTTCCCAGACCTGCACCAGCCAGAGGAGGCCCAGATCCAA
AGCTCTAGCAATGTCACGCAGGACATGGAGAGGCAAGTGCAAGCCAATGCTATCCGTATCCAGGTCCTAC
AGGAGGAGAACAAGCGGCTCCAGTCGATGCTGACCAAAATCCGAGAGGTGGCCCAGCAGGGAGGCCTCAA
GATGGTCCCGCAGGGCCAGCTCTGGTCCCCTCCCTACAAGGGCATCCAGGGAGCAACCCCTCCAGCCCAG
GCCCAGAGTGCATTCTCAGGGTTGACAGGCAGACGGCAGTCTCCTGGCAGCAGGACAAGCAGCACAGGCA
GGACCCATCCTGGCGGGCTCCGTACATCCCCGTCTCGGCAGCCCGGCGGCTTGCCCAGCAAGTTCTCTTT
GGGGGATGGAAGTCATTCAGCATCCTGCACCCAGAATCCCATAAGGGCCTTGGCCAGGCTGAGGAGAAAG
CTTTCACCGAACCGTCAGGCTGGTTCTACATACCAGCCCCAGGAGCGGCCCACGTAA

Translation (718 aa):
MAHLLGSQACMDSLRKDLTDLQGTIVDVFSRAGPVRFPSWKFPDRVACDLDMVALLEHYDHVPGDPEFTQ
LSHAVLLELVIDRLLLLLQSCASYLENLSVEQMMPPARAAGPCMSVGLTVRRFWSNLLRLGLLYQQAVPQ
KRANQGEISITKPTAKGEPARSPECMTAKFIKPPSPVPGLPLICQGLQSIPVRVSLRSPGGTSEKTKSVY
SQTVETALVPCDACTSVQGSLWEVGKVVISLCQSQNLPSSLGQFQKLVKDSLGLKPLPAATVGHWAAEQS
KDLTRLNKHVGALTQLVGPLRAQLEDAEGQKDGLRKQVSKLEQALQQEQGQRQRQTEEAERTLAKCEHDR
HQLLTETCDLKTKVAVLEGDLKQQQKSIQAMEAKAQQLEEEGERRAAAERQVQQLEEQVQLLAGRLDGAS
QQIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRSELEEQLQSLQ
SDREQEQCQLQAQQELLQSLQQEKQDLEQVTTDLQLTISELRQQLEELKERERLLVAFPDLHQPEEAQIQ
SSSNVTQDMERQVQANAIRIQVLQEENKRLQSMLTKIREVAQQGGLKMVPQGQLWSPPYKGIQGATPPAQ
AQSAFSGLTGRRQSPGSRTSSTGRTHPGGLRTSPSRQPGGLPSKFSLGDGSHSASCTQNPIRALARLRRK
LSPNRQAGSTYQPQERPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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