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Report for CCDS34378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34378.1 Public Homo sapiens 6 TRIM39 24 110 108 CCDS HistoryNCBI Gene:56658Re-query CCDS DB by CCDS ID:34378.1Re-query CCDS DB by GeneID:56658See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376659.9 ENSP00000365847.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376659.9Link to Ensembl Protein Viewer:ENSP00000365847.5Re-query CCDS DB by Nucleotide ID:ENST00000376659Re-query CCDS DB by Protein ID:ENSP00000365847
Original member Current member EBI ENST00000396548.5 ENSP00000379797.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396548.5Link to Ensembl Protein Viewer:ENSP00000379797.1Re-query CCDS DB by Nucleotide ID:ENST00000396548Re-query CCDS DB by Protein ID:ENSP00000379797
Original member Current member EBI ENST00000396551.9 ENSP00000379800.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396551.9Link to Ensembl Protein Viewer:ENSP00000379800.3Re-query CCDS DB by Nucleotide ID:ENST00000396551Re-query CCDS DB by Protein ID:ENSP00000379800
Original member Current member NCBI NM_001369521.2 NP_001356450.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369521.2Link to Protein Sequence:NP_001356450.1Re-query CCDS DB by Nucleotide ID:NM_001369521Re-query CCDS DB by Protein ID:NP_001356450Link to BLAST:NP_001356450.1
Original member Current member NCBI NM_001369522.1 NP_001356451.1 Accepted alive Link to Nucleotide Sequence:NM_001369522.1Link to Protein Sequence:NP_001356451.1Re-query CCDS DB by Nucleotide ID:NM_001369522Re-query CCDS DB by Protein ID:NP_001356451Link to BLAST:NP_001356451.1
Original member Current member NCBI NM_001369523.1 NP_001356452.1 Accepted alive Link to Nucleotide Sequence:NM_001369523.1Link to Protein Sequence:NP_001356452.1Re-query CCDS DB by Nucleotide ID:NM_001369523Re-query CCDS DB by Protein ID:NP_001356452Link to BLAST:NP_001356452.1
Original member Current member NCBI NM_172016.2 NP_742013.1 Accepted alive Link to Nucleotide Sequence:NM_172016.2Link to Protein Sequence:NP_742013.1Re-query CCDS DB by Nucleotide ID:NM_172016Re-query CCDS DB by Protein ID:NP_742013Link to BLAST:NP_742013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356450.1 488 Q9HCM9-2 488 100% 0 0
NP_001356451.1 488 Q9HCM9-2 488 100% 0 0
NP_001356452.1 488 Q9HCM9-2 488 100% 0 0
NP_742013.1 488 Q9HCM9-2 488 100% 0 0

Chromosomal Locations for CCDS 34378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30329318 30329770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30330781 30330876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30335745 30335975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30339908 30339930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30340505 30340620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30341712 30342259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCAGAGACAAGTCTGTTAGAGGCTGGGGCCTCTGCAGCCTCTACAGCTGCGGCTTTGGAGAACTTAC
AGGTGGAGGCGAGCTGCTCTGTGTGCCTGGAGTATCTGAAGGAACCTGTCATCATTGAGTGTGGGCACAA
CTTCTGCAAAGCTTGCATCACCCGCTGGTGGGAGGACCTAGAGAGGGACTTCCCTTGTCCTGTCTGTCGA
AAGACATCCCGCTACCGCAGTCTCCGACCTAATCGGCAACTAGGCAGTATGGTGGAAATTGCCAAGCAGC
TCCAGGCCGTCAAGCGGAAGATCCGGGATGAGAGCCTCTGCCCCCAACACCATGAGGCCCTCAGCCTTTT
CTGTTATGAGGACCAGGAGGCTGTATGCTTGATATGTGCAATTTCCCACACCCACCGGGCCCACACCGTT
GTGCCACTGGACGATGCTACACAGGAGTACAAGGAAAAACTGCAGAAGTGTCTGGAGCCCCTGGAACAGA
AGCTGCAGGAGATCACTCGCTGCAAGTCCTCTGAGGAGAAGAAGCCTGGTGAGCTCAAGAGACTAGTGGA
AAGTCGCCGACAGCAGATCTTGAGGGAGTTTGAAGAGCTTCATAGGCGGCTGGATGAAGAGCAGCAGGTG
TTGCTTTCACGACTGGAAGAAGAGGAACAGGACATTCTGCAGCGACTCCGAGAAAATGCTGCTCACCTTG
GGGACAAGCGCCGGGACCTGGCCCACTTGGCTGCCGAGGTGGAGGGCAAGTGCTTACAGTCAGGCTTCGA
GATGCTTAAGGATGTCAAAAGTACCCTGGAAAAATGTGAAAAGGTGAAGACCATGGAGGTGACTTCAGTA
TCCATAGAGCTGGAAAAGAACTTCAGCAATTTTCCCCGACAGTACTTTGCCCTAAGGAAAATCCTTAAAC
AGCTAATTGCGGATGTGACCCTGGACCCTGAGACAGCTCATCCTAACCTAGTCCTGTCAGAGGATCGTAA
GAGCGTCAAGTTCGTGGAGACAAGACTCCGGGATCTCCCTGACACACCAAGGCGTTTCACCTTCTACCCT
TGCGTCCTGGCTACTGAGGGTTTCACCTCAGGTCGACACTACTGGGAGGTGGAGGTGGGCGACAAGACCC
ACTGGGCAGTGGGTGTATGCCGGGACTCCGTGAGCCGAAAGGGCGAGTTGACTCCACTCCCTGAGACTGG
CTACTGGCGGGTGCGGCTATGGAATGGGGACAAATATGCAGCCACCACCACACCTTTTACCCCTTTGCAC
ATCAAGGTGAAACCCAAGCGGGTAGGCATATTCCTAGACTATGAGGCCGGCACACTGTCTTTCTACAATG
TCACAGACCGCTCTCATATCTACACCTTCACTGATACTTTTACTGAGAAACTTTGGCCCCTCTTCTACCC
AGGCATCCGGGCTGGACGGAAGAATGCTGCACCACTTACCATCAGGCCCCCAACAGATTGGGAGTGA

Translation (488 aa):
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR
KTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTV
VPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQV
LLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKCEKVKTMEVTSV
SIELEKNFSNFPRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFYP
CVLATEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTTPFTPLH
IKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLTIRPPTDWE


Links Key
 Links to:   History report
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