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Report for CCDS89508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89508.1 Public Mus musculus 2 Or5t18 23 108 98 CCDS HistoryNCBI Gene:257913Re-query CCDS DB by CCDS ID:89508.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216117.1 ENSMUSP00000150485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216117.1Link to Ensembl Protein Viewer:ENSMUSP00000150485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216117Re-query CCDS DB by Protein ID:ENSMUSP00000150485
Original member Current member NCBI NM_181818.2 NP_861539.2 Accepted alive Link to Nucleotide Sequence:NM_181818.2Link to Protein Sequence:NP_861539.2Re-query CCDS DB by Nucleotide ID:NM_181818Re-query CCDS DB by Protein ID:NP_861539Link to BLAST:NP_861539.2

Chromosomal Locations for CCDS 89508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86806050 86806997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGAGGAACATCACAGAAGCTACTTTCTTTGTTCTCAAGGGACTCACAGACAACAATGAACTTCAGATCA
TTCTATTTCTCCTCTTTCTAGCAATTTACATTTTTACTCTGATAGGAAATGTAGGACTTATTATTTTAGT
TGTTGGGGATTCTCAGCTCCACAACCCTATGTACTGTTTTCTCAGTGTGTTATCTTCTGTAGATGCCTGT
TATTCTACAGATATCACCCCAAATATGCTAGTAGGCTTTATGTCTAAAAGCAAAATCATTTCATTTTATG
GTTGTGCAACACAGATGTTTCTTGCTGTTACATTTGGAACCACAGAATGCTTTCTTTTGGCAGCAATGGC
TTATGACCGATATGTAGCCATTCATGACCCACTTCTGTATGCAGTGAGCATGTCTCCTCGAGTCTATATA
CCACTTATCATTGCATCCTATGCTGGTGGAATTGTGCATGCTATTATCCACACAGTGGCCACTTTCAGCC
TGTCTTTCTGTCGGTCCAATGAAGTCAAACATATATTCTGTGATATACCACCTCTTCTTGCTATTTCCTG
CTCTGAAACTTATGTAAATGAGCTCTTGCTCTTCTTCTTCGTGAGTTTCATCGAGCTAGTCACCATTCTG
ATTGTCCTGGTCTCCTATGCTTTTATCCTGTTGTCAATTCTGAAGATGAATTCATCTGAAGGGAGAAGAA
AAGTCTTCTCTACATGTGGAGCTCACCTCACTGCTGTGTCCATTTATTATGGCACAATCCTCTTCATGTA
TGTAAGACCTAGTTCCAACTATTCCCTGGAGCATGACATGATAGTGTCTACATTTTATACCATTGGGATT
CCCATGCTCAACCCCATCATCTACAGTCTGAGAAACAAAGATGTAAAAGAGGCAATGAAAAGAGTTTTGA
GAAAAAAATTAATATTAAACATAGAATTAAAAAATTAA

Translation (315 aa):
MRNITEATFFVLKGLTDNNELQIILFLLFLAIYIFTLIGNVGLIILVVGDSQLHNPMYCFLSVLSSVDAC
YSTDITPNMLVGFMSKSKIISFYGCATQMFLAVTFGTTECFLLAAMAYDRYVAIHDPLLYAVSMSPRVYI
PLIIASYAGGIVHAIIHTVATFSLSFCRSNEVKHIFCDIPPLLAISCSETYVNELLLFFFVSFIELVTIL
IVLVSYAFILLSILKMNSSEGRRKVFSTCGAHLTAVSIYYGTILFMYVRPSSNYSLEHDMIVSTFYTIGI
PMLNPIIYSLRNKDVKEAMKRVLRKKLILNIELKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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