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Report for CCDS56772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56772.1 Public Mus musculus 11 Or2av9 23 108 98 CCDS HistoryNCBI Gene:257932Re-query CCDS DB by CCDS ID:56772.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000180165.2 ENSMUSP00000136008.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180165.2Link to Ensembl Protein Viewer:ENSMUSP00000136008.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180165Re-query CCDS DB by Protein ID:ENSMUSP00000136008
Original member Current member NCBI NM_001011770.2 NP_001011770.2 Accepted alive Link to Nucleotide Sequence:NM_001011770.2Link to Protein Sequence:NP_001011770.2Re-query CCDS DB by Nucleotide ID:NM_001011770Re-query CCDS DB by Protein ID:NP_001011770Link to BLAST:NP_001011770.2

Chromosomal Locations for CCDS 56772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58489719 58490753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGACCTGAAGAATAAAACTACATCCAGTTTCATCCTGCTGGGGCTCTTTCCCAGCTGCAGGTACCCAA
ACCTCCTTATCTCCTTCATCCTCCTCATCTACACCCTGGCCTCGGCTGGAAACTCCCTCTTGATACTCCT
CATCTGGCTGGACCCCCGTCTCCACACACCCATGTACTTCCTGCTCAGTCAGCTGTCTGTCATTGACCTG
GCTTATATCTCCTGCACAGTGCCCAAGGCAGCCATCAACTACTTCACCGGGAGGCAGAACATCTCCTTCT
TTGCCTGTGCCACTCAGATGTTTTCCTTCCTCACCCTTGGCCTTGCTGAGTGCATCTTACTGACACTAAT
GGCCTATGACCGTTATGTGGCTGTCTGTAACCCTCTGAGGTATACCATTCTCATGAGCCCCAAGGTCTGT
CTGATGATGGCCGCCTCCACCTGGATCGGAGCAGTTGCCGCAGCCCTCGTTCATACCGTATACCCCATGA
ATTTTCCTATCTGTGGCTCCAGGGAGATCAACCATTACTTCTGTGAGATGCCCGCTATTCTGAGAATGTC
TTGTGTGGATACATCTGTCTACGAGATGGTGAAGTTTGTGTCAACTATTATCTTTCTCCTGACCCCATTC
ACTTTGATCCTGACTTCCTATACCCTCATATTCCTCACTGTCCTCAGGATGAACTCTCCCAAGGGGCGGA
ATAAAGCCTTGGCCACCTGCTCCTCCCACCTGACTGTCGTGAGCCTCTATTTTGGTCAGGCCATCTTCAT
CTACATGACGCCCACTTCTTCCCACACACCCGACCAGGACCAGGTAGGTGCTGTGCTGGGCACCATAGTG
ACCCCCATGCTCAATCCTCTTATCTACAGCCTGAGAAACAAGGAAGTGATAGGGGCCCTGCAGAAGTGCA
CCGGCAGATGCTGCAGCCGTGATAGAGTCGGCTCCCTCCGGTGCTGCACTCAGAAGTGTCCTATCCTTCA
TCTTAAAAGCGAATTTAAGTCTAAGGAAATCCAGATTGGAAACAGAGCCTTGTAA

Translation (344 aa):
MDLKNKTTSSFILLGLFPSCRYPNLLISFILLIYTLASAGNSLLILLIWLDPRLHTPMYFLLSQLSVIDL
AYISCTVPKAAINYFTGRQNISFFACATQMFSFLTLGLAECILLTLMAYDRYVAVCNPLRYTILMSPKVC
LMMAASTWIGAVAAALVHTVYPMNFPICGSREINHYFCEMPAILRMSCVDTSVYEMVKFVSTIIFLLTPF
TLILTSYTLIFLTVLRMNSPKGRNKALATCSSHLTVVSLYFGQAIFIYMTPTSSHTPDQDQVGAVLGTIV
TPMLNPLIYSLRNKEVIGALQKCTGRCCSRDRVGSLRCCTQKCPILHLKSEFKSKEIQIGNRAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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