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Report for CCDS20077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20077.1 Public Mus musculus 6 Or2f1 23 108 98 CCDS HistoryNCBI Gene:258016Re-query CCDS DB by CCDS ID:20077.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053647.4 ENSMUSP00000052043.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053647.4Link to Ensembl Protein Viewer:ENSMUSP00000052043.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053647Re-query CCDS DB by Protein ID:ENSMUSP00000052043
Original member Current member EBI ENSMUST00000213997.1 ENSMUSP00000150467.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213997.1Link to Ensembl Protein Viewer:ENSMUSP00000150467.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213997Re-query CCDS DB by Protein ID:ENSMUSP00000150467
Original member Current member NCBI NM_001011799.1 NP_001011799.1 Accepted alive Link to Nucleotide Sequence:NM_001011799.1Link to Protein Sequence:NP_001011799.1Re-query CCDS DB by Nucleotide ID:NM_001011799Re-query CCDS DB by Protein ID:NP_001011799Link to BLAST:NP_001011799.1

Chromosomal Locations for CCDS 20077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42744039 42744992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGGAAAAGACAACCAGACATGGATACATGAATTTATCCTCCTTGGCCTGTCCAGTGACTGGAATACTG
AAGTCTCTCTCTTCGTCCTGTTCTTGCTGATGTACTTGGTGACAGTATTGGGGAACTTCCTCATCATTGT
TCTGATCAGACTGGACAGCAGACTCCACACTCCCATGTATTTCTTTCTCACCAACCTGTCCCTGGTGGAT
GTGTCTTATGCCACAAGCATCGTCCCCCAGCTGCTGGCTCATTTTCTTGCCACACACAAAACAATCCCAT
TTCTGAGCTGTGCAGCCCAGTTATTTTTCTCTCTGGGCTTAGGAGGGATTGAGTTTGTCCTATTAGCAAT
GATGGCCTATGACCGTTATGTGGCAGTGTGCAATCCACTGAGATACTCCGCCATAATGCATACAGGACTA
TGCAGTAGGATGGCTATTGTTTCTTGGGTCGGTGGTTCCATCAACTCAGTCATGCAGACTGCTATCACCT
TCCAACTGCCCATGTGCACGAACGTGTACATAGACCATATATCCTGCGAGCTGCTTGCTGTGGTGAGGCT
GGCCTGTGTGGACACCTCTGCCAATGAAGTTGCTATCATGGTATCCAGCATCATTCTCCTGATGACTCCA
TTCTGCCTGGTCCTCCTATCCTACATCCAGATCATCTCCACCATCCTCAAAATCCAGTCCAAAGAGGGAA
GAAAGAAAGCCTTTCACACCTGTGCCTCCCACCTCACTGTGGTTGCCCTGTGCTATGGCATGGCCATTTT
CACGTATATACAGCCCCACTCCAGCCCCTCTGTCCTACAGGAAAAGTTGATTTCTCTATTCTATGCGATT
TTGACACCCATGTTGAACCCCATGATTTACAGTCTAAGAAATAAGGAAGTGAAGGGGGCTTGGCAGAAAT
TACTGGGACAATTCTCTGAGTTCACATCAAAACTGAAAACCTGA

Translation (317 aa):
MGKDNQTWIHEFILLGLSSDWNTEVSLFVLFLLMYLVTVLGNFLIIVLIRLDSRLHTPMYFFLTNLSLVD
VSYATSIVPQLLAHFLATHKTIPFLSCAAQLFFSLGLGGIEFVLLAMMAYDRYVAVCNPLRYSAIMHTGL
CSRMAIVSWVGGSINSVMQTAITFQLPMCTNVYIDHISCELLAVVRLACVDTSANEVAIMVSSIILLMTP
FCLVLLSYIQIISTILKIQSKEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSVLQEKLISLFYAI
LTPMLNPMIYSLRNKEVKGAWQKLLGQFSEFTSKLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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