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Report for CCDS23009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23009.1 Public Mus musculus 9 Or8b42 23 108 98 CCDS HistoryNCBI Gene:258028Re-query CCDS DB by CCDS ID:23009.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063716.1 ENSMUSP00000066714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063716.1Link to Ensembl Protein Viewer:ENSMUSP00000066714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000063716Re-query CCDS DB by Protein ID:ENSMUSP00000066714
Original member Current member EBI ENSMUST00000216644.1 ENSMUSP00000150506.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216644.1Link to Ensembl Protein Viewer:ENSMUSP00000150506.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216644Re-query CCDS DB by Protein ID:ENSMUSP00000150506
Original member Current member EBI ENSMUST00000216502.2 ENSMUSP00000150507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216502.2Link to Ensembl Protein Viewer:ENSMUSP00000150507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216502Re-query CCDS DB by Protein ID:ENSMUSP00000150507
Original member Current member NCBI NM_001011806.1 NP_001011806.1 Accepted alive Link to Nucleotide Sequence:NM_001011806.1Link to Protein Sequence:NP_001011806.1Re-query CCDS DB by Nucleotide ID:NM_001011806Re-query CCDS DB by Protein ID:NP_001011806Link to BLAST:NP_001011806.1

Chromosomal Locations for CCDS 23009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38430284 38431219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCCTCTGGCAATGACTCCACCACAGTGAAGGAGTTTATTCTGTTGGGCTTGACACAGCAACCAGAGC
TCCAGCTGCCTTTCTTCTTCCTGTTCTTGGGAATCTATGTGGTCTCCATTGTGGGGAACCTGGGCTTGAT
TGTTCTGATTGTTTTGAATCCTCACCTGCACACCCCCATGTACTACTTTCTCTTCAACCTTTCCTTCATT
GATTTCTGCTACTCCTCTGTCATAACCCCCAAAATGCTGGTGGGTTTTGTGAAACAGAATATCATTTCTC
ATGCTGAGTGCATGACTCAACTCTTTTTCTTTGCCTTCTTTGTTATTGATGAATGTTGTATTTTGACAGC
AATGTCCTATGACAGATATGTGGCCATATGTAAGCCATTGCTTTATAAGGTTACCATGTCCTATCAGGTC
TGCTTCATGATGACAGTGAGTGTGTACATGATGGGGTTTGTGGGTGCCATAGCCCACACAATTTGCATGC
TGAGACTCACCTTCTGTGATGGCAACATCATTAATCACTACATGTGTGACATACCCCCTCTCCTGAAGCT
CTCCTGCACAAACACCTCTGTCAATGAGCTGGTGGTTTTCATTGTTGTGGGTGTCAATGTGATAGGACCT
ACATTGATCATCTTTACTTCTTATACTTTGATCATTTTCAACATTTCACATATCCGTTCCACTGAAGGCA
GATCCAAGGCTATTAGTACCTGTAGCTCGCACATAATAGCTGTTTCTATTTTCTTTGGAGCCTCAGCATT
CATGTATCTTAAGCCTTCTCCTGTTGGATCTGTGGGTGAAGATAAAGTATCTACGGTTTTCTACACCATT
GTGGGCCCGATGTTGAACCCTTTCATCTACAGTTTGAGGAACAAGGATGTCCACATTGCACTGCATAAGA
CTTTGAAGAAAAGCATGCTTATCTAG

Translation (311 aa):
MASGNDSTTVKEFILLGLTQQPELQLPFFFLFLGIYVVSIVGNLGLIVLIVLNPHLHTPMYYFLFNLSFI
DFCYSSVITPKMLVGFVKQNIISHAECMTQLFFFAFFVIDECCILTAMSYDRYVAICKPLLYKVTMSYQV
CFMMTVSVYMMGFVGAIAHTICMLRLTFCDGNIINHYMCDIPPLLKLSCTNTSVNELVVFIVVGVNVIGP
TLIIFTSYTLIIFNISHIRSTEGRSKAISTCSSHIIAVSIFFGASAFMYLKPSPVGSVGEDKVSTVFYTI
VGPMLNPFIYSLRNKDVHIALHKTLKKSMLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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