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Report for CCDS29628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29628.1 Public Mus musculus 19 Or5an1b 23 108 98 CCDS HistoryNCBI Gene:258117Re-query CCDS DB by CCDS ID:29628.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052558.3 ENSMUSP00000056003.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052558.3Link to Ensembl Protein Viewer:ENSMUSP00000056003.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052558Re-query CCDS DB by Protein ID:ENSMUSP00000056003
Original member Current member EBI ENSMUST00000207241.2 ENSMUSP00000146333.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207241.2Link to Ensembl Protein Viewer:ENSMUSP00000146333.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207241Re-query CCDS DB by Protein ID:ENSMUSP00000146333
Original member Current member NCBI NM_001011839.2 NP_001011839.1 Accepted alive Link to Nucleotide Sequence:NM_001011839.2Link to Protein Sequence:NP_001011839.1Re-query CCDS DB by Nucleotide ID:NM_001011839Re-query CCDS DB by Protein ID:NP_001011839Link to BLAST:NP_001011839.1

Chromosomal Locations for CCDS 29628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12321887 12322825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATTAAGGAAAGAAACTTTACTGAGATCACCGAATTCATCCTCCTAGGATTCTCTGATTTCCCCCAAA
TCACAGCACTGCTTTTTGTTATGTTCCTCATCCTGTATATTACAACCCTGACCTGGAACCTGTCCCTTGT
TGTTTTAATAAGGATGGACTCCTATCTCCATACACCTATGTACTTCTTCCTTAGTAATCTGTCCTTTATA
GACATCTGCTATATCTCTTCTACAGTCCCAAAGATGCTTTCCAACCTCTTCCAGGAAAAGCAAACTATCA
GCTTTGTGGGCTGCATAGTTCAATACTTTATGTTTGCCACAATGGGACTGAGTGAATCTTGCCTCATGAC
AGCCATGGCCTATGACAGGTATGCTGCCATTTGTAACCCTCTTCTGTACTCATCAGTCATGTCACCCACA
CTTTGCGCTCAGATGGTGATGGGAAGCTACACAGCAGGAATCATGGGTTCTCTATCTCAGGTGTGTGCCT
TGCTGCAGCTCCACTTCTGTGGACCTAACGTCATCAGACATTTCTTCTGTGACATGCCCCAGCTGTTAAA
TCTATCCTGCACTGACACTTTTTTTGCACAGGTAGTGCTTCTCATATTAACAATGTTGTTTTGTATTTCA
AATGCTTTAGTCATCATAATATCCTATGGCTATATTGTCTTGTCCATTCTGAAGATCACTTCAGCTAAGG
GTAGGTCCAAGGCATTCAATACTTGTGCTTCTCACCTGACAGCTGTTTCCCTATTCTACACCTCCAGTGC
TTTTGTATATTTGAGTTCCAGCTCTGGTGGCTCCTCCAGCTTTGATAGATTTGTGTCTGTCTTCTACACT
GTGTTGATTCCTATGTTGAACCCTTTGGTTTATAGTCTGAGGAACAAGGAAATCAAAGATGCTGGAAAGA
GGTTACAGAAGAAGCTGGGATGCTGCTAA

Translation (312 aa):
MIKERNFTEITEFILLGFSDFPQITALLFVMFLILYITTLTWNLSLVVLIRMDSYLHTPMYFFLSNLSFI
DICYISSTVPKMLSNLFQEKQTISFVGCIVQYFMFATMGLSESCLMTAMAYDRYAAICNPLLYSSVMSPT
LCAQMVMGSYTAGIMGSLSQVCALLQLHFCGPNVIRHFFCDMPQLLNLSCTDTFFAQVVLLILTMLFCIS
NALVIIISYGYIVLSILKITSAKGRSKAFNTCASHLTAVSLFYTSSAFVYLSSSSGGSSSFDRFVSVFYT
VLIPMLNPLVYSLRNKEIKDAGKRLQKKLGCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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