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Report for CCDS21563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21563.1 Public Mus musculus 7 Or52s1b 23 108 98 CCDS HistoryNCBI Gene:258139Re-query CCDS DB by CCDS ID:21563.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21563.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074272.1 ENSMUSP00000073884.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074272.1Link to Ensembl Protein Viewer:ENSMUSP00000073884.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000074272Re-query CCDS DB by Protein ID:ENSMUSP00000073884
Original member Current member EBI ENSMUST00000216581.1 ENSMUSP00000150894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216581.1Link to Ensembl Protein Viewer:ENSMUSP00000150894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216581Re-query CCDS DB by Protein ID:ENSMUSP00000150894
Original member Current member NCBI NM_001011847.1 NP_001011847.1 Accepted alive Link to Nucleotide Sequence:NM_001011847.1Link to Protein Sequence:NP_001011847.1Re-query CCDS DB by Nucleotide ID:NM_001011847Re-query CCDS DB by Protein ID:NP_001011847Link to BLAST:NP_001011847.1

Chromosomal Locations for CCDS 21563.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103172691 103173635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTTAACATACAATAAAACTAATGTCCATCCCTCAACCTTCATTCTCATTGGCATTCCTGGGTTGGAGG
CAGCACACATGTGGATTTCCATCCCTTTTTGCATGGGCTACATTTTGGCATTAGTGGGAAACAGTTCACT
TCTGTTCATCATCAAGACAGACTCCAGCCTCCATGAGCCAATGTACCTCTTTCTCTGTATGTTGGCAGTG
GCTGACCTTGTAGTGTGCACTACAGCTGTTCCCAAACTTCTCAGTCTCTTCTGGTTTCACGATGGAGAGA
TTCGCTTTGAAGCTTGCCTCACTCAAGTATTTCTGATTCACTCTTGCTCAACCATGGAGTCTGGTTTCCT
TGTAGGAATGGCCTTTGACCGTTATGTAGCCATTTGTAACCCATTAAGACACTCAGCTATTTTGACACGC
ACTGTAACTGGGGCAATGGGCCTGGCTATTGTACTTCGTGGAGCAGCCTTTCTAAGTCTTCACCCTTTCT
TGCTACGCTGGCTTCCCTACTGCAAGACAAATATAATTTCCCACACTTACTGTGAGTTCATGGCCCTCAT
CAAGATTGCCTGTGCTGAGACAAGCATCCGCAGAGCTTACAGCCTCATCGTTGCCTTCCTCACAGGTGGG
GTAGACTTCATATTGATCATTTGCTCTTATGTCCTCATACTCAACACAGTCTTCCACCTTCCTTCCAAGG
ATGCCAGACTCAAGACTCTGGGCACCTGTGGCTCACATGTCTGTGTCATCTTAGTGTTCTACACCCCAGC
CTTCTTCTCCTTCCTTACCCATAGGTTTGGGCACAAAGTGGCTCCACATGTACACATACTTGTTGCCAAT
ATGTATCTTCTTGTACCACCCATGTTAGACCCCATTATTTATGGTGTAAGAACCAAGAAGATTAGAGACA
GGTTCCTTAAATTGTTTCTTTTCCAAAGAGTCTGA

Translation (314 aa):
MLTYNKTNVHPSTFILIGIPGLEAAHMWISIPFCMGYILALVGNSSLLFIIKTDSSLHEPMYLFLCMLAV
ADLVVCTTAVPKLLSLFWFHDGEIRFEACLTQVFLIHSCSTMESGFLVGMAFDRYVAICNPLRHSAILTR
TVTGAMGLAIVLRGAAFLSLHPFLLRWLPYCKTNIISHTYCEFMALIKIACAETSIRRAYSLIVAFLTGG
VDFILIICSYVLILNTVFHLPSKDARLKTLGTCGSHVCVILVFYTPAFFSFLTHRFGHKVAPHVHILVAN
MYLLVPPMLDPIIYGVRTKKIRDRFLKLFLFQRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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