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Report for CCDS29679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29679.1 Public Mus musculus 19 Or9i1b 23 108 98 CCDS HistoryNCBI Gene:258151Re-query CCDS DB by CCDS ID:29679.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081520.2 ENSMUSP00000080235.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081520.2Link to Ensembl Protein Viewer:ENSMUSP00000080235.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000081520Re-query CCDS DB by Protein ID:ENSMUSP00000080235
Original member Current member EBI ENSMUST00000216835.1 ENSMUSP00000148945.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216835.1Link to Ensembl Protein Viewer:ENSMUSP00000148945.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216835Re-query CCDS DB by Protein ID:ENSMUSP00000148945
Original member Current member EBI ENSMUST00000216623.1 ENSMUSP00000150484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216623.1Link to Ensembl Protein Viewer:ENSMUSP00000150484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216623Re-query CCDS DB by Protein ID:ENSMUSP00000150484
Original member Current member NCBI NM_001011850.1 NP_001011850.1 Accepted alive Link to Nucleotide Sequence:NM_001011850.1Link to Protein Sequence:NP_001011850.1Re-query CCDS DB by Nucleotide ID:NM_001011850Re-query CCDS DB by Protein ID:NP_001011850Link to BLAST:NP_001011850.1

Chromosomal Locations for CCDS 29679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13919022 13919972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCCAAGAATAACATTACCACAGTAACGGAATTCATTCTAATAGGCTTTAATGACCACCCCAAGTGGG
AGATTCCACTATTTCTGGTATTTCTTAGCTTTTATCTTGTCACCATGCTGGGAAACTTGGGCATGGTCAT
TCTTATACATGTAGATGTCCAACTCCACATCCCAATGTACTTCTTTCTGAGCCATCTCTCTGTGTTGGAT
GCCTGCTATACCTCAGTCATCACCCCTCAGATACTGGCAACGCTGGCTACAGGTAAAACAGTCGTTTCCT
ATGGACGTTGTGCTGCCCAGTTCTTCTTCTTCACTATCTGTGCAGCTACAGAATGTTTCCTGCTGTCTGT
GATGGCCTATGATCGCTATGTTGCTATTAGCAATCCACTGCTCTACACTGTGGCCATGGGCCCTAGAAAA
TGTTGGAGTTTAGTAGTAGGAGCATATGTCTGTGGAATGTGTGGGGCCATTCTGCGTACCACATGCACCT
TCTCTCTCTCCTTCTGTGAAAATAATCAGATCAATTTCTTCTTTTGTGACCTCCCACCTCTGCTGAAGCT
GGCCTGTAGTGACACAACAAATATTGAAATTATCATTGTCTTCTTTGGGAATTTTGTAATTTCGGCCAAT
GCCTTAGTCATCCTCATTTCCTACCTGCTCATCATCAAAGCTGTCATGAGAATGAAGTCTTCAGGTAGAA
GAGCAAAGACTTTCTCAACATGTGTCTCCCACCTCACTGCTGTGGCTCTTTTATTTGGGACACTCATCTT
TATGTACATACGTAGTGGTTCAAAGAAATCCCTGGAAGAAGATAAGGTTGTGTCTGTCTTCTACACTGTG
GTCATTCCCATGCTGAACCCACTTGTCTACAGCCTAAGAAACAAGGATGTCAAGGCTGCATTCAAGAAGG
TTACTGGTAAATGGCAGGTCTCCCACAGCATACAATACTGA

Translation (316 aa):
MAKNNITTVTEFILIGFNDHPKWEIPLFLVFLSFYLVTMLGNLGMVILIHVDVQLHIPMYFFLSHLSVLD
ACYTSVITPQILATLATGKTVVSYGRCAAQFFFFTICAATECFLLSVMAYDRYVAISNPLLYTVAMGPRK
CWSLVVGAYVCGMCGAILRTTCTFSLSFCENNQINFFFCDLPPLLKLACSDTTNIEIIIVFFGNFVISAN
ALVILISYLLIIKAVMRMKSSGRRAKTFSTCVSHLTAVALLFGTLIFMYIRSGSKKSLEEDKVVSVFYTV
VIPMLNPLVYSLRNKDVKAAFKKVTGKWQVSHSIQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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