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Report for CCDS28037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28037.1 Public Mus musculus 16 Or2aj4 23 108 98 CCDS HistoryNCBI Gene:258158Re-query CCDS DB by CCDS ID:28037.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090062.1 ENSMUSP00000087516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090062.1Link to Ensembl Protein Viewer:ENSMUSP00000087516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090062Re-query CCDS DB by Protein ID:ENSMUSP00000087516
Original member Current member EBI ENSMUST00000215040.1 ENSMUSP00000149087.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215040.1Link to Ensembl Protein Viewer:ENSMUSP00000149087.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215040Re-query CCDS DB by Protein ID:ENSMUSP00000149087
Original member Current member EBI ENSMUST00000216070.1 ENSMUSP00000150528.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216070.1Link to Ensembl Protein Viewer:ENSMUSP00000150528.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216070Re-query CCDS DB by Protein ID:ENSMUSP00000150528
Original member Current member EBI ENSMUST00000215476.1 ENSMUSP00000150917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215476.1Link to Ensembl Protein Viewer:ENSMUSP00000150917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215476Re-query CCDS DB by Protein ID:ENSMUSP00000150917
Original member Current member NCBI NM_001011855.1 NP_001011855.1 Accepted alive Link to Nucleotide Sequence:NM_001011855.1Link to Protein Sequence:NP_001011855.1Re-query CCDS DB by Nucleotide ID:NM_001011855Re-query CCDS DB by Protein ID:NP_001011855Link to BLAST:NP_001011855.1

Chromosomal Locations for CCDS 28037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 19565940 19566881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAATATGAGAACTACACTTTTAACAGCGACTTCATCCTCTTGGGACTGTTCTCTTCTTCAAAGACAA
GCTTAACTTTTTTCTCATTTATATTTTTCATTTTTATTATGGCTATAACAGAAAATGCCCTCATGATCCT
CCTAATCCACAGGGATTCTCGACTCCATACCCCAATGTATTTCCTGCTTAGTCATCTCTCCTTCATGGAT
ATCTTGCACATTTCCAACATTGTTCCTAAAATGATTGCTGACTTCCTCTCAGGCAGCAGAACTATTTCCT
TTGCAGGCTGTGCCTTCCAGATATTTCTCTCTCTTACCTTGCTAGGTGGTGAGTGCCTTCTCCTGGCAGC
CATGTCCTATGATCGATATGTGGCCATCTGCCACCCACTTCGCTACCCTGTGCTGATGAGGGATAACTCC
AGTAGGCTCCTGGCTGCAGGCTCCTGGCTGGTGGGGATCCTCAACTCCATAGTACACACAGTTTTTGCAC
TCCACTTTCCCTTCTGCCACTCAAGAGCCATTGATCACTTTTTCTGCGAAGTCCCTGCCATGTTGAAATT
GTCATGTATAGACACAACACACTATGAACGAGGCGTTTATGTGAGTGGCATTATTTTTCTGCTGATCCCA
TTTTCCATGATCTCTATATCTTATGTGCAAATTCTCCTCACTGTATTCCAAATGCAGTCATCAGGGGCCC
GGCAAAAGTCCTTTTCCACCTGTTCCTTCCACATGGTTGTTGTCATAATGTACTATGGGCCATTCATTTT
TACATATATGAGACCTCGCTCATACCACACTCCAGGGCAGGATAAATTTTTGGCAATATTCTACACCATC
CTGACACCCACACTCAACCCCATAATCTACAGCTTTCGTAATAAAGATGTCCTTATGGCTGTGAAAAACA
TCGTCCAAAGTAATTTTTTGAATAAAAAATGA

Translation (313 aa):
MEYENYTFNSDFILLGLFSSSKTSLTFFSFIFFIFIMAITENALMILLIHRDSRLHTPMYFLLSHLSFMD
ILHISNIVPKMIADFLSGSRTISFAGCAFQIFLSLTLLGGECLLLAAMSYDRYVAICHPLRYPVLMRDNS
SRLLAAGSWLVGILNSIVHTVFALHFPFCHSRAIDHFFCEVPAMLKLSCIDTTHYERGVYVSGIIFLLIP
FSMISISYVQILLTVFQMQSSGARQKSFSTCSFHMVVVIMYYGPFIFTYMRPRSYHTPGQDKFLAIFYTI
LTPTLNPIIYSFRNKDVLMAVKNIVQSNFLNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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