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Report for CCDS22854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22854.1 Public Mus musculus 9 Or7g27 23 108 98 CCDS HistoryNCBI Gene:258249Re-query CCDS DB by CCDS ID:22854.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071259.2 ENSMUSP00000071239.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071259.2Link to Ensembl Protein Viewer:ENSMUSP00000071239.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071259Re-query CCDS DB by Protein ID:ENSMUSP00000071239
Original member Current member EBI ENSMUST00000213344.1 ENSMUSP00000149986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213344.1Link to Ensembl Protein Viewer:ENSMUSP00000149986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213344Re-query CCDS DB by Protein ID:ENSMUSP00000149986
Original member Current member EBI ENSMUST00000215572.2 ENSMUSP00000150474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215572.2Link to Ensembl Protein Viewer:ENSMUSP00000150474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215572Re-query CCDS DB by Protein ID:ENSMUSP00000150474
Original member Current member NCBI NM_207145.2 NP_997028.1 Accepted alive Link to Nucleotide Sequence:NM_207145.2Link to Protein Sequence:NP_997028.1Re-query CCDS DB by Nucleotide ID:NM_207145Re-query CCDS DB by Protein ID:NP_997028Link to BLAST:NP_997028.1

Chromosomal Locations for CCDS 22854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19338462 19339400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAATCCACCAATCAAACAGATGCAATAGAATTTCTGCTCTTGGGCCTTTCAGATGATCCAGAGTTAC
AGCCCATTATTTTCGGACTGTTCCTGTTTATGTACCTGGTCACATTTCTGGGGAACCTAATTATAACCCT
GACCATCAGTGCTGAGTGCCATCTCCATACCCCCATGTACTTTTTTCTCTCCAATCTATCTGTGGCTGAT
ATCTGTATAAGCTCAACTACAGTCCCAAAGATGCTCTTGAACATCCAAACACCGGATCACAGAATAACTT
ACTCAGGTTGCCTCACTCAGGCTTGCTTTGTCTTGCTTTTTGCTGGATTAGAAAATTGCTTGCTTGCAGC
AATGGCCTATGACCGCTATGTGGCCATTTGCCACCCTCTGAGGTACACAGTCATCATGAACTCATGCTTC
TGTAGTATACTTATTGTAGTTTCCTTGGCTATTAGTGCTGTCAATGCACTACTGCTCAGTCTCATGGTGC
TGCATCTGAATTTCTGCACAGAGGTTGAAATCCCACACTTCTTCTGTGAACTTGCTCAGATCATAAAGCT
TGCCTGCTCAGATACTCTCATAAATAATATTTTGATTTATATCTCAGCTTTCATGTTTGGTGGTATTCCT
TTCTTTGGAATATTTCTTTCTTATACTGAAATTGTCTCCTCTGTTTTGAAAATTCCATCAAGGCAAGGAA
GGCATAAAGCATTTTCCACGTGTGGCTCTCACCTGTCAGTAGTTTCCTTGTTTTATGGGACAGGCTTAGG
AGTGTACATTAGCTCTGCAGTTACTGAATCTCCCAGGAAAACAGCCGTTGCTTCAGTAATGTACTCTATT
GTCACTCAGATGCTGAACCCTTTTATCTACAGCCTGAGGAACAGAGACATGAAGGAAGCTTTAAGGAAGC
ACGTTGGAAGGATAGCTTCCATTGTATAA

Translation (312 aa):
MESTNQTDAIEFLLLGLSDDPELQPIIFGLFLFMYLVTFLGNLIITLTISAECHLHTPMYFFLSNLSVAD
ICISSTTVPKMLLNIQTPDHRITYSGCLTQACFVLLFAGLENCLLAAMAYDRYVAICHPLRYTVIMNSCF
CSILIVVSLAISAVNALLLSLMVLHLNFCTEVEIPHFFCELAQIIKLACSDTLINNILIYISAFMFGGIP
FFGIFLSYTEIVSSVLKIPSRQGRHKAFSTCGSHLSVVSLFYGTGLGVYISSAVTESPRKTAVASVMYSI
VTQMLNPFIYSLRNRDMKEALRKHVGRIASIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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