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Report for CCDS27005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27005.1 Public Mus musculus 14 Or4k5 23 108 98 CCDS HistoryNCBI Gene:258275Re-query CCDS DB by CCDS ID:27005.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061020.1 ENSMUSP00000051755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061020.1Link to Ensembl Protein Viewer:ENSMUSP00000051755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000061020Re-query CCDS DB by Protein ID:ENSMUSP00000051755
Original member Current member EBI ENSMUST00000213163.1 ENSMUSP00000148960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213163.1Link to Ensembl Protein Viewer:ENSMUSP00000148960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213163Re-query CCDS DB by Protein ID:ENSMUSP00000148960
Original member Current member EBI ENSMUST00000215451.1 ENSMUSP00000149189.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215451.1Link to Ensembl Protein Viewer:ENSMUSP00000149189.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215451Re-query CCDS DB by Protein ID:ENSMUSP00000149189
Original member Current member EBI ENSMUST00000215327.1 ENSMUSP00000151127.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215327.1Link to Ensembl Protein Viewer:ENSMUSP00000151127.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215327Re-query CCDS DB by Protein ID:ENSMUSP00000151127
Original member Current member NCBI NM_146278.2 NP_666390.1 Accepted alive Link to Nucleotide Sequence:NM_146278.2Link to Protein Sequence:NP_666390.1Re-query CCDS DB by Nucleotide ID:NM_146278Re-query CCDS DB by Protein ID:NP_666390Link to BLAST:NP_666390.1

Chromosomal Locations for CCDS 27005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50147901 50148872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGATAACACCAATTATTCAGTGGTGTCTGAGTTTGTGTTACTTGGACTCTCTAGTTCTCGGGAACTTC
AGATTTTCTACTTTGTTTTCTTCTCTATGCTTTATATTGTCATCATATTAGGAAACCTTCTCATCATCAT
AGCTGTGACTTCTGACAGCAGCCTGCACTCACCGATGTATTTCCTCCTGGGAAACCTTTCCTTTTTTGAC
ATTTGTCAGGCTTCTTTTGCTACACCTAAAATGATTGTAGACTTTCTGAGTGAACACAAGACTATATCAT
TCAGTGGCTGCATAGCCCAAATTTTTTTCATTCACCTCTTTACAGGAGGAGAGATGGTAATCCTAGTTTC
CATGGCCTATGATAGATATGTGGCCATATGCAAACCTCTACATTATATGACCATCATGAACCAAACTACA
TGTACTGCCTTGGTAGTAATCTCTTGGGCTGTGGGCTTGGTACACACATTGAGCCAGTTATCATTTACTG
TAAAACTGTCATTTTGTGGACCCAATGAAGTAGACAGCTTTTTTTGTGATCTTCCTCGAGTGGTCAAACT
CGCCTGCATTGACTCATACATTACTGAAATACTTATTGTGGTAAACAGTGGAATTCTTTCCTTAAGCACT
TTCTCTCTCTTAGTGAGCTCCTATGTCATAATTCTTGTCACAGTTTGGTTCAAGTCCTCTGCTGCCATGG
CCAAGGCATTTTCTACACTGGCTGCTCACATCATGGTAGTAGTATTATTCTTTGGTCCTTGCATCTTCAT
TTATGTGTGGCCATTTACTACCTATCCTGTGGATAAAATTCTTGCTATATTTTATACAGTTTTCACTCCG
ATCCTTAATCCCATTATTTACACACTAAGAAATAGAGACATGAAAGCTGTCATGGGAAAAATTGCTGCTC
ATTATCTCAGACCTCCCAAAGTAGCTGAAATGTCATTTGTAGCGAGAATTTCTCTTTATTGA

Translation (323 aa):
MDNTNYSVVSEFVLLGLSSSRELQIFYFVFFSMLYIVIILGNLLIIIAVTSDSSLHSPMYFLLGNLSFFD
ICQASFATPKMIVDFLSEHKTISFSGCIAQIFFIHLFTGGEMVILVSMAYDRYVAICKPLHYMTIMNQTT
CTALVVISWAVGLVHTLSQLSFTVKLSFCGPNEVDSFFCDLPRVVKLACIDSYITEILIVVNSGILSLST
FSLLVSSYVIILVTVWFKSSAAMAKAFSTLAAHIMVVVLFFGPCIFIYVWPFTTYPVDKILAIFYTVFTP
ILNPIIYTLRNRDMKAVMGKIAAHYLRPPKVAEMSFVARISLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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