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Report for CCDS27020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27020.1 Public Mus musculus 14 Or11h6 23 108 98 CCDS HistoryNCBI Gene:258296Re-query CCDS DB by CCDS ID:27020.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062534.4 ENSMUSP00000050184.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062534.4Link to Ensembl Protein Viewer:ENSMUSP00000050184.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062534Re-query CCDS DB by Protein ID:ENSMUSP00000050184
Original member Current member NCBI NM_146299.2 NP_666411.2 Accepted alive Link to Nucleotide Sequence:NM_146299.2Link to Protein Sequence:NP_666411.2Re-query CCDS DB by Nucleotide ID:NM_146299Re-query CCDS DB by Protein ID:NP_666411Link to BLAST:NP_666411.2

Chromosomal Locations for CCDS 27020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50642283 50643269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGATCACTCATTTCTCAGTTGTTTCTGTTTTTCTAACAGCTTTCGGATCCAAGAACAGCTCCATACATT
TTGTGACTGAGTTTATCCTCCTGGGTTTCAGTAATCAGGGGGAGATGCAAAGTTTCTTCTTCTGTTCAAT
TCTGATTCTTTACCTCCTGACCTTGCTGGGGAATGGAACTATTGTTTGTGCTGTGAGATGGGATCAGAGG
CTCCACACACCCATGTACATCTTCCTGGGAAACTTTGCCTTTTTAGAGATATGGTATGTCTCTTCCACCA
TCCCAAACATGTTGGTCAATATTCTCTCTGAGAATAAGACCATCTCCTTCTCTGCCTGCTTCCTTCAATT
CTATTTCTTTTTTTCACTTGGTACAACAGAGTGTTTCTTCTTGTCAGCTATGGCTTATGATCGATACCTG
GCTATCTGTCGACCATTACACTACCCCTCTATCATGACTAGGAAGTTCTGTGTCATCCTGATTTGTATCT
GCTGGGTGAGTGGATTCCTCTGCTATCCAGTCCCAATTGTCCTCATCTCCCAACTTCCTTTCTGTGGTCC
TAACATCATTGACCACTTTGTGTGTGACCCAGGACCATTGTTTGCACTATCCTGTGTGCCTGCTCCTTCC
ACTGAGCTTCTCTGTTATACCTTCAACTCAATGATTATCTTTGGGCCCTTCTTCTGCATCCTGGGATCCT
ATACTCTAGTACTCAGAGCTGTGTTTCGAGTTCCTTCTGGTGCTGGTCGAACTAAAGCTTTCTCTACATG
TGGATCTCATTTAGTGGTTGTGTCTCTGTTCTATGGAACTCTTATGGTGATGTATGTGAGCCCAACATCA
GGGAATCCTGCAGGAATGCAGAAGATTGTTACTCTGATTTACTCAGCCTTGACCCCCCTCTTAAATCCTC
TCATCTATACTCTCCGAAACAAAGAAATGAAAAATGCCTTAAAGAAACTGCTAAAACTAACAACTATCCA
AAACTGA

Translation (328 aa):
MITHFSVVSVFLTAFGSKNSSIHFVTEFILLGFSNQGEMQSFFFCSILILYLLTLLGNGTIVCAVRWDQR
LHTPMYIFLGNFAFLEIWYVSSTIPNMLVNILSENKTISFSACFLQFYFFFSLGTTECFFLSAMAYDRYL
AICRPLHYPSIMTRKFCVILICICWVSGFLCYPVPIVLISQLPFCGPNIIDHFVCDPGPLFALSCVPAPS
TELLCYTFNSMIIFGPFFCILGSYTLVLRAVFRVPSGAGRTKAFSTCGSHLVVVSLFYGTLMVMYVSPTS
GNPAGMQKIVTLIYSALTPLLNPLIYTLRNKEMKNALKKLLKLTTIQN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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