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Report for CCDS28772.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28772.2 Public Mus musculus 17 Or10al7 23 108 98 CCDS HistoryNCBI Gene:258324Re-query CCDS DB by CCDS ID:28772.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28772.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28772.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216476.1 ENSMUSP00000149327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216476.1Link to Ensembl Protein Viewer:ENSMUSP00000149327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216476Re-query CCDS DB by Protein ID:ENSMUSP00000149327
Original member Current member NCBI NM_146327.2 NP_666439.2 Accepted alive Link to Nucleotide Sequence:NM_146327.2Link to Protein Sequence:NP_666439.2Re-query CCDS DB by Nucleotide ID:NM_146327Re-query CCDS DB by Protein ID:NP_666439Link to BLAST:NP_666439.2

Chromosomal Locations for CCDS 28772.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38054599 38055564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGAGTGTCAACTGCTCTCTGTGGCAGGAGAACAGCTTGTCTGTCAAACGCTTTGCATTTGCCAAGTTCT
CTGAGGTCCCTGGAGAATGCTTCCTCCTGTTTACCCTCATCCTCCTCATGTTCTTAGTATCACTGACAGG
AAATGCACTCATAACCCTTGCCATCTGCACCAGTCCAGCCCTACACACTCCCATGTACTTCTTTCTGGCC
AACTTGTCTCTCCTGGAGATTGGCTACACTTGTACTGTCATACCGAAGATGTTGCAGAGCCTTGTGAGTG
AGGCCCGAGGGATCTCTCGGGAGGGATGTGCCACACAGATGTTTTTCTTCACACTATTTGGTATAACTGA
GTGCTGCCTACTGGCAGCCATGGCCTTTGACCGCTGCATGGCCATATGCTCCCCACTCCACTATACAACC
CGAATGAATCGTGGGGTATGTGCCCATTTGGCAATAGTTTCATGGGGAACAGGTTGCATTGTAGGGTTGG
GACAAACCAATTTTATTTTCTCCTTAAACTTCTGTGGCCCCTGTGAGATAGACCACTTCTTCTGTGACCT
TCCACCTGTCCTGGCACTTGCCTGTGGAGATACATCCCAAAATGAGGCTGCCATCTTTGTGGTAGCCATC
CTCTGTATTTCTAGTCCATTTTTACTCATCATTTATTCCTATGTCCGAATTCTGGTTGCAGTGCTGGTGA
TGCCTTCACCCGAGGGGCGCCATAAAGCTTTCTCTACCTGTTCTTCCCATCTACTTGTAGTCACACTGTT
TTTTGGCTCAGGATCTATTAACTACTTGAGGCCCAAGTCTAGCCACTCACCAGGAATGGACAAACTCTTG
GCCCTTTTCTACACAGCGGTGACTTCCATGCTGAACCCCATCATCTATAGCTTAAGGAACAAGGAAGTGA
AGGCAGCACTGAGAAGAACTCTGGGCCTGAAGAAAGTTCTGACTATGAATAGGTAA

Translation (321 aa):
MSVNCSLWQENSLSVKRFAFAKFSEVPGECFLLFTLILLMFLVSLTGNALITLAICTSPALHTPMYFFLA
NLSLLEIGYTCTVIPKMLQSLVSEARGISREGCATQMFFFTLFGITECCLLAAMAFDRCMAICSPLHYTT
RMNRGVCAHLAIVSWGTGCIVGLGQTNFIFSLNFCGPCEIDHFFCDLPPVLALACGDTSQNEAAIFVVAI
LCISSPFLLIIYSYVRILVAVLVMPSPEGRHKAFSTCSSHLLVVTLFFGSGSINYLRPKSSHSPGMDKLL
ALFYTAVTSMLNPIIYSLRNKEVKAALRRTLGLKKVLTMNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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