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Report for CCDS16290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16290.1 Public Mus musculus 2 Or10ag2 23 108 98 CCDS HistoryNCBI Gene:258347Re-query CCDS DB by CCDS ID:16290.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054974.1 ENSMUSP00000058786.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054974.1Link to Ensembl Protein Viewer:ENSMUSP00000058786.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000054974Re-query CCDS DB by Protein ID:ENSMUSP00000058786
Original member Current member NCBI NM_146350.2 NP_666462.2 Accepted alive Link to Nucleotide Sequence:NM_146350.2Link to Protein Sequence:NP_666462.2Re-query CCDS DB by Nucleotide ID:NM_146350Re-query CCDS DB by Protein ID:NP_666462Link to BLAST:NP_666462.2

Chromosomal Locations for CCDS 16290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87418050 87419021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGTTTTATTTACTGTCTGTAGATGAAGAGAAAATTAAAGCAGAAAAATCGAATGCCTCTTCGCTGATTG
AATTTATCCTACTTGGTTTTTCTGATGTCCCCAATCTCCAATGGATTCTGTTTGGGATTTTTTTGATCAT
GTATTTGACTATTCTGATGTGCAACAGTACTATAGTGCTCATAACAAGAACTGACCCTGCTCTGCAGACC
CCTATGTATTTTTTTCTTAGCAACTTTTCTTTTGTGGAGATATGTTATGTAACAGTCACAATTCCAAGGA
TGCTTGTGGACCTGTGTACTCAGAAAGGAAATATCTCTATACTTGCCTGTGCCACTCAAATGTGTTTTAT
CCTTATGCTTGGAGGCACAGAGTGCCTCCTCCTGACAGCAATGGCCTATGACCGTTATGTGGCCATTTGT
AATCCTCTACACTATTCTTTAGTCATGAACCACAGGATCTGTACACAGTTAGTGGCAGCCTGCTGGATCA
GTGTCATACCAGTTGTAATTGGACAAACATACCAGATTTTCTCTCTGCCTTTTTGTGGCTCTAACAGAAT
TAATCACTTCATTTGTGATATCCCACCAGTACTCAAACTTGCTTGTGGTGACACATTTGTGAATGAAATA
GCAGTCTACGTAGTTGCGATGGTATTTGTCATGGTTCCCTTTATGCTGATCATTTTCTCCTATTGCAAAA
TTATCTGCAGTATTCTGAAACTGTCATCAGCCAAAGGAAGGACCAAAGCTTTCTCCACCTGCTCCTCTCA
CCTCATAGTTGTAGTCTTATTCTATGGAACAGCTGGTATCACATACTTACAACCCAAGCCAAATCAATCA
GAAATAACTGGAAAACTGTTGTCTCTTTTTTACACCATTTTGATACCAACTCTGAATCCCATTATATATA
CTCTGAGGAACAAGGACATCATGGCCGCTCTGAGAAAACTCCTTAGTAAGATACTAGTGTGA

Translation (323 aa):
MFYLLSVDEEKIKAEKSNASSLIEFILLGFSDVPNLQWILFGIFLIMYLTILMCNSTIVLITRTDPALQT
PMYFFLSNFSFVEICYVTVTIPRMLVDLCTQKGNISILACATQMCFILMLGGTECLLLTAMAYDRYVAIC
NPLHYSLVMNHRICTQLVAACWISVIPVVIGQTYQIFSLPFCGSNRINHFICDIPPVLKLACGDTFVNEI
AVYVVAMVFVMVPFMLIIFSYCKIICSILKLSSAKGRTKAFSTCSSHLIVVVLFYGTAGITYLQPKPNQS
EITGKLLSLFYTILIPTLNPIIYTLRNKDIMAALRKLLSKILV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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