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Report for CCDS27007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27007.1 Public Mus musculus 14 Or4k6 23 108 98 CCDS HistoryNCBI Gene:258360Re-query CCDS DB by CCDS ID:27007.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059565.1 ENSMUSP00000050705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059565.1Link to Ensembl Protein Viewer:ENSMUSP00000050705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000059565Re-query CCDS DB by Protein ID:ENSMUSP00000050705
Original member Current member EBI ENSMUST00000214152.1 ENSMUSP00000149395.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214152.1Link to Ensembl Protein Viewer:ENSMUSP00000149395.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214152Re-query CCDS DB by Protein ID:ENSMUSP00000149395
Original member Current member EBI ENSMUST00000214388.1 ENSMUSP00000150683.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214388.1Link to Ensembl Protein Viewer:ENSMUSP00000150683.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214388Re-query CCDS DB by Protein ID:ENSMUSP00000150683
Original member Current member NCBI NM_146363.2 NP_666475.2 Accepted alive Link to Nucleotide Sequence:NM_146363.2Link to Protein Sequence:NP_666475.2Re-query CCDS DB by Nucleotide ID:NM_146363Re-query CCDS DB by Protein ID:NP_666475Link to BLAST:NP_666475.2

Chromosomal Locations for CCDS 27007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50237903 50238883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAGAGGCTTAACCATTCCAGAGTGCCGGAATTCGTGTTACTTGGACTCACTGATTCTCCTGAGCTTC
AGATATTCTTCTTTGTGGCATTTTCCATTTTCTACTTAATGACAATGCTTGGGAATTGCTTAATTCTGTT
CACTGTCCTGTCCACTTCACATCTCCACTCCCCCATGTTCTTCCTTCTCAGCAACCTTTCTCTGATTGAC
ATATGCCTCTCCTCCTTTGCAACACCAAAGATGATCATGGACTTCTTTGCTCATCACAAGACCATTTCTT
TTGAGGGATGCATTTCTCAAATCTTTCTTTTGCATCTTTTCACTGGAACTGAAATTGTACTGCTGATTTC
CATGTCTTTTGACAGGTATATTGCCATATGTAAACCTCTCTACTATTCAACAATTATGAGCCAAAAAGTG
TGTGTTGGACTTGTAATAGCATCTTGGACGGTAGGCTTCCTACACACAATGAGTCAACTAGTTTTTATCC
TCTATTTACCCTTCTGTGGTCCAAATGTGGTAGACAGTTTCTTCTGTGACCTTCCTTTGGTGATCCAATT
GGCTTGTATAGATACCTATGTTCTTGGTGTCTTCATGGTAGCAACCAGTGGTGTTATTGCTCTTATAAGT
TTTCTGCTTTTGCTCATCTCCTACATTGTGGTGCTTGTCACCATCAGGGGCCACTCCTCAATTGGATCAT
CTAAGGCTCTTTCCACCTGCACATCTCATTTCACAGTGGTGCTCATGTTCTTTGGACCATGCATTCTCAT
TTATGTGTGGCCTTTCACAAACTTTCTGATGGATAAAATTCTTTCTGTCTTCTACACCATCTTCACCCCC
TTTCTGAATCCACTTATCTATACTTTGAGAAATCAAGAAGTGAGAACAGCAGTGAAGAAGAAAATAAGTA
ACCAATATTTCTCTTTTGGTAAGATAAATCCACATTATACAGTGAAAGGACTGGAGCGATCCAGAGAGTA
A

Translation (326 aa):
MERLNHSRVPEFVLLGLTDSPELQIFFFVAFSIFYLMTMLGNCLILFTVLSTSHLHSPMFFLLSNLSLID
ICLSSFATPKMIMDFFAHHKTISFEGCISQIFLLHLFTGTEIVLLISMSFDRYIAICKPLYYSTIMSQKV
CVGLVIASWTVGFLHTMSQLVFILYLPFCGPNVVDSFFCDLPLVIQLACIDTYVLGVFMVATSGVIALIS
FLLLLISYIVVLVTIRGHSSIGSSKALSTCTSHFTVVLMFFGPCILIYVWPFTNFLMDKILSVFYTIFTP
FLNPLIYTLRNQEVRTAVKKKISNQYFSFGKINPHYTVKGLERSRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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