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Report for CCDS16524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16524.1 Public Mus musculus 2 Or4g17 23 108 98 CCDS HistoryNCBI Gene:258379Re-query CCDS DB by CCDS ID:16524.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062407.5 ENSMUSP00000052153.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062407.5Link to Ensembl Protein Viewer:ENSMUSP00000052153.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062407Re-query CCDS DB by Protein ID:ENSMUSP00000052153
Original member Current member EBI ENSMUST00000209096.1 ENSMUSP00000147014.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209096.1Link to Ensembl Protein Viewer:ENSMUSP00000147014.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209096Re-query CCDS DB by Protein ID:ENSMUSP00000147014
Original member Current member NCBI NM_146381.1 NP_666493.1 Accepted alive Link to Nucleotide Sequence:NM_146381.1Link to Protein Sequence:NP_666493.1Re-query CCDS DB by Nucleotide ID:NM_146381Re-query CCDS DB by Protein ID:NP_666493Link to BLAST:NP_666493.1

Chromosomal Locations for CCDS 16524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111379002 111379937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGATCAAATAAATGAAACTGTAGCTTTTGAATTTGTGTTGTTGGGACTCTCCAGTTCTTGGAAAAATA
CAATTTTTCTCATGTCCACCTTCTCTTTGCTCTATGTAAGCATCATCGTGGGAAACCTTTTCATTGTCTT
TTTGGTAATTAATGACTCCCGTTTACAGTCTCCTATGTATTTTCTTTTGGCCAATCTGTCCCTCATTGAT
GTTGGACTTTCCTCTACCACAGTGCCCAAGATGATCTCAGATCTTCTGAAAGAGCACAAAGTAATATCTT
TCCACAGTTGCATGACTCAGATCTGCTCCATCCACATTATGGGAGGAGTGGAGATGGTGCTGCTCATAGC
CATGGCGTTTGACAGGTACACGGCCATCTGTAAGCCTCTGCACTACATGAGCATCATGAGCCCTAGAATA
TGCATTTCATTTGTAATTGCTGGCTGGGTCACTGGAGTGGTCCATGCCATGTCACAGTTCTCTTTTGTTG
TGAACCTGCCTTTTTGTGGTCCTAACAAAGTGGACAGCTTTTACTGCGACTTCCCTCGAATCATACAACT
GGCATGCACGGATAGAGACACATTTGAGTTTGTTGTTGCTGCCAACAGTGGCTTCATGACCTTGGGGACC
TTCTTCTTGCTTCTCCTCTCCTATGTCTTCATTTTGGTCACAGTCTGGCAAAGGTCTTCAGGGGACTTGT
CAAAGGCGCTTGTCACTCTGTCAGCTCACATCACTGTGGTTGTTCTGTTTTTTACTCCATGCATGTTTCT
CTATGTGTGGCCTTTCCCCACATCATCGACTGACAAATACCTGTTCATTGTTGACTTTGCTGTCACCCCT
GCTCTTAATCCTGTCATCTATACTTTAAGGAACAAAGATATGAAGGAAGCCATAAAAAAGCTGAGCAAGC
AGAGATGTTACATCAGAATTTTCTGA

Translation (311 aa):
MDQINETVAFEFVLLGLSSSWKNTIFLMSTFSLLYVSIIVGNLFIVFLVINDSRLQSPMYFLLANLSLID
VGLSSTTVPKMISDLLKEHKVISFHSCMTQICSIHIMGGVEMVLLIAMAFDRYTAICKPLHYMSIMSPRI
CISFVIAGWVTGVVHAMSQFSFVVNLPFCGPNKVDSFYCDFPRIIQLACTDRDTFEFVVAANSGFMTLGT
FFLLLLSYVFILVTVWQRSSGDLSKALVTLSAHITVVVLFFTPCMFLYVWPFPTSSTDKYLFIVDFAVTP
ALNPVIYTLRNKDMKEAIKKLSKQRCYIRIF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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