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Report for CCDS26825.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26825.1 Public Mus musculus 14 Or2t6 23 108 98 CCDS HistoryNCBI Gene:258387Re-query CCDS DB by CCDS ID:26825.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26825.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035250.5 ENSMUSP00000046509.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035250.5Link to Ensembl Protein Viewer:ENSMUSP00000046509.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035250Re-query CCDS DB by Protein ID:ENSMUSP00000046509
Original member Current member EBI ENSMUST00000206298.2 ENSMUSP00000146132.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206298.2Link to Ensembl Protein Viewer:ENSMUSP00000146132.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000206298Re-query CCDS DB by Protein ID:ENSMUSP00000146132
Original member Current member EBI ENSMUST00000217642.1 ENSMUSP00000149641.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217642.1Link to Ensembl Protein Viewer:ENSMUSP00000149641.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217642Re-query CCDS DB by Protein ID:ENSMUSP00000149641
Original member Current member EBI ENSMUST00000216079.1 ENSMUSP00000149975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216079.1Link to Ensembl Protein Viewer:ENSMUSP00000149975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216079Re-query CCDS DB by Protein ID:ENSMUSP00000149975
Original member Current member NCBI NM_146392.1 NP_666504.1 Accepted alive Link to Nucleotide Sequence:NM_146392.1Link to Protein Sequence:NP_666504.1Re-query CCDS DB by Nucleotide ID:NM_146392Re-query CCDS DB by Protein ID:NP_666504Link to BLAST:NP_666504.1

Chromosomal Locations for CCDS 26825.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 14175130 14176080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGATGGAAACAAAACCTTTCCCAGTGACTTCACCTTTGTGGGACTCTTTACTCACAACAAAGCCTCAG
GATTCCTGTTCAGTGTCATATGTGCCACGTTCTTCATGGCCATATTGGCAAATGGGGTTATGATCTTTCT
CATTCACATAGACCCTCACCTCCACACCCCCATGTACTTCCTCCTCAGCCACCTCTCCTTCATTGACATG
ATGTATATCTCCACTATTGTGCCTAAGATTTTGGTTGATTACATTGTAGGCAAAGGGATCATCTCTTTTG
CTGCCTGTACAGCCCAGTACTTTCTCTACATGGGCTTTGTAGGGGCCGAGTTCTTCCTGCTGGGACTTAT
GGCCTATGACCGCTACGTGGCCATCTGTAATCCGCTCCGTTATCCTGTCCTCATGAGTCGGAGGGTCTGC
TGGTTTATTTTGGCCAGCTCTTGGTTCGGTGGGGCTTTGGACAGTTTCCTTCTCACTCCCATCACCATGA
GTCTCCCATTCTGTGCATCCCACAAGATTAATCACTTTTTCTGCGAGGCTCCCACAATGCTGAGGCTGGC
CTGTGGTGACAAAGCCATATATGAAATGGTGATGTATATCTGCTGTGTTGTAATGCTGTTGGTCCCCTTC
TCTGTGGTGATCACATCTTATGCCCAGATACTGGTCACAGTACATCACATAAAGTCTGAAGAAGGGAGGA
AGAAGGCTTTTGCCACCTGCTCATCACATGTGATTGTGGTGACATTGTTTTATGGGGCTGCTTTGTACAC
CTATATGCTTCCCCAAGCCTATCACACCCCACTCAAAGATAAAATCTTCTCAGCCTTTTATACCATCCTC
ACCCCCTTGCTCAACCCTGTTATTTATAGTCTGAGGAACAGAGATGTGGCAGGGGCTTTAAAGAGGGTGA
TAGCAAGACACAGAGGAGCCTGCAGTGTGGAAAGAAAATAA

Translation (316 aa):
MDGNKTFPSDFTFVGLFTHNKASGFLFSVICATFFMAILANGVMIFLIHIDPHLHTPMYFLLSHLSFIDM
MYISTIVPKILVDYIVGKGIISFAACTAQYFLYMGFVGAEFFLLGLMAYDRYVAICNPLRYPVLMSRRVC
WFILASSWFGGALDSFLLTPITMSLPFCASHKINHFFCEAPTMLRLACGDKAIYEMVMYICCVVMLLVPF
SVVITSYAQILVTVHHIKSEEGRKKAFATCSSHVIVVTLFYGAALYTYMLPQAYHTPLKDKIFSAFYTIL
TPLLNPVIYSLRNRDVAGALKRVIARHRGACSVERK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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