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Report for CCDS11728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11728.1 Public Homo sapiens 17 GALK1 24 110 108 CCDS HistoryNCBI Gene:2584Re-query CCDS DB by CCDS ID:11728.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225614.6 ENSP00000225614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000225614.6Link to Ensembl Protein Viewer:ENSP00000225614.1Re-query CCDS DB by Nucleotide ID:ENST00000225614Re-query CCDS DB by Protein ID:ENSP00000225614
Original member Current member EBI ENST00000588479.6 ENSP00000465930.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588479.6Link to Ensembl Protein Viewer:ENSP00000465930.1Re-query CCDS DB by Nucleotide ID:ENST00000588479Re-query CCDS DB by Protein ID:ENSP00000465930
Original member Current member NCBI NM_000154.2 NP_000145.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000154.2Link to Protein Sequence:NP_000145.1Re-query CCDS DB by Nucleotide ID:NM_000154Re-query CCDS DB by Protein ID:NP_000145Link to BLAST:NP_000145.1
Original member Current member NCBI NM_001381985.1 NP_001368914.1 Accepted alive Link to Nucleotide Sequence:NM_001381985.1Link to Protein Sequence:NP_001368914.1Re-query CCDS DB by Nucleotide ID:NM_001381985Re-query CCDS DB by Protein ID:NP_001368914Link to BLAST:NP_001368914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000145.1 392 P51570 392 100% 0 0
NP_001368914.1 392 P51570 392 100% 0 0

Chromosomal Locations for CCDS 11728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75758056 75758127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75758210 75758372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75758449 75758599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75762704 75762885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75763014 75763149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75763320 75763439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75763897 75764086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75764972 75765136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCTGCTTTGAGACAGCCCCAGGTCGCGGAGCTGCTGGCCGAGGCCCGGCGAGCCTTCCGGGAGGAGT
TCGGGGCCGAGCCCGAGCTGGCCGTGTCAGCGCCGGGCCGCGTCAACCTCATCGGGGAACACACGGACTA
CAACCAGGGCCTGGTGCTGCCTATGGCTCTGGAGCTCATGACGGTGCTGGTGGGCAGCCCCCGCAAGGAT
GGGCTGGTGTCTCTCCTCACCACCTCTGAGGGTGCCGATGAGCCCCAGCGGCTGCAGTTTCCACTGCCCA
CAGCCCAGCGCTCGCTGGAGCCTGGGACTCCTCGGTGGGCCAACTATGTCAAGGGAGTGATTCAGTACTA
CCCAGCTGCCCCCCTCCCTGGCTTCAGTGCAGTGGTGGTCAGCTCAGTGCCCCTGGGGGGTGGCCTGTCC
AGCTCAGCATCCTTGGAAGTGGCCACGTACACCTTCCTCCAGCAGCTCTGTCCAGACTCGGGCACAATAG
CTGCCCGCGCCCAGGTGTGTCAGCAGGCCGAGCACAGCTTCGCAGGGATGCCCTGTGGCATCATGGACCA
GTTCATCTCACTTATGGGACAGAAAGGCCACGCGCTGCTCATTGACTGCAGGTCCTTGGAGACCAGCCTG
GTGCCACTCTCGGACCCCAAGCTGGCCGTGCTCATCACCAACTCTAATGTCCGCCACTCCCTGGCCTCCA
GCGAGTACCCTGTGCGGCGGCGCCAATGTGAAGAAGTGGCCCGGGCGCTGGGCAAGGAAAGCCTCCGGGA
GGTACAACTGGAAGAGCTAGAGGCTGCCAGGGACCTGGTGAGCAAAGAGGGCTTCCGGCGGGCCCGGCAC
GTGGTGGGGGAGATTCGGCGCACGGCCCAGGCAGCGGCCGCCCTGAGACGTGGCGACTACAGAGCCTTTG
GCCGCCTCATGGTGGAGAGCCACCGCTCACTCAGAGACGACTATGAGGTGAGCTGCCCAGAGCTGGACCA
GCTGGTGGAGGCTGCGCTTGCTGTGCCTGGGGTTTATGGCAGCCGCATGACGGGCGGTGGCTTCGGTGGC
TGCACGGTGACACTGCTGGAGGCCTCCGCTGCTCCCCACGCCATGCGGCACATCCAGGAGCACTACGGCG
GGACTGCCACCTTCTACCTCTCTCAAGCAGCCGATGGAGCCAAGGTGCTGTGCTTGTGA

Translation (392 aa):
MAALRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKD
GLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLS
SSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSL
VPLSDPKLAVLITNSNVRHSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARH
VVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGG
CTVTLLEASAAPHAMRHIQEHYGGTATFYLSQAADGAKVLCL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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