NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16256.1 Public Mus musculus 2 Or8k27 23 108 98 CCDS HistoryNCBI Gene:258403Re-query CCDS DB by CCDS ID:16256.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000216162.2 ENSMUSP00000149089.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216162.2Link to Ensembl Protein Viewer:ENSMUSP00000149089.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216162Re-query CCDS DB by Protein ID:ENSMUSP00000149089
Original member Current member EBI ENSMUST00000217586.2 ENSMUSP00000149248.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217586.2Link to Ensembl Protein Viewer:ENSMUSP00000149248.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217586Re-query CCDS DB by Protein ID:ENSMUSP00000149248
Original member Current member EBI ENSMUST00000213789.2 ENSMUSP00000150862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213789.2Link to Ensembl Protein Viewer:ENSMUSP00000150862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213789Re-query CCDS DB by Protein ID:ENSMUSP00000150862
Original member Current member EBI ENSMUST00000216165.1 ENSMUSP00000150875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216165.1Link to Ensembl Protein Viewer:ENSMUSP00000150875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216165Re-query CCDS DB by Protein ID:ENSMUSP00000150875
Original member Current member NCBI NM_146408.2 NP_666520.2 Accepted alive Link to Nucleotide Sequence:NM_146408.2Link to Protein Sequence:NP_666520.2Re-query CCDS DB by Nucleotide ID:NM_146408Re-query CCDS DB by Protein ID:NP_666520Link to BLAST:NP_666520.2

Chromosomal Locations for CCDS 16256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86445039 86445980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAGAACCAAAACCGCACAGTAGTAACTGAATTCATCCTGATGGGCATCACTGACCACCCTGAGCTGC
AATCCTCATTGTTTGGTTTGTTTCTTCTCATCTATCTGATATCACTGGTGGGAAATTTGGGCATGATTGT
CCTTACAATGGTGGACTCCAGGCTGCAAACACCCATGTATTTCTTTCTTAGACACCTCGCTACTACTGAC
CTTGGTTATTCAACAACTGTGGGACCCAAAATGTTAACAAATTTTATTGTTGATCAAAATAGAATATCCT
TTAACCTTTGTGCTACACAGTTAGCCTTCTTTCTTCTGTTCATTGCTTGTGAACTTTTTATTCTGTCTGC
AATGTCCTATGACCGCTATGTGGCTATCTGTAAGCCTCTGTTCTATATGGTCATCATGTCAAAAAGACTA
TGCTGGGTGCTTGTAGTAATCCCTTATGTCTACTGTACAATTGTGGCTCTTTTAATCACAATTAAGATTT
TCACTTTGTCTTTCTGTGGCTCCAATGTCATCAGTCATTTCTACTGTGACAGTCTTCCTTTGTTATCTTT
GGTCTGCTCAAATACACAAGAAATTGAAGTCATAATGTTGTTCTTATCAGCTTTTAATTTAATTTCCTCT
CTTTTGCTTGTTCTTGTGTCCTACCTGCTCATCCTTATAGCTATACTTAGGATGAACTCTGCTGAGGGCA
GGCGCAAGGCTTTCTCCACCTGTGGATCCCACCTGACTGTGGTCACTGTCTTCTATGGAACGTTGATATT
TATGTACATGCAGCCCAAATCCAGTCATTCCTTTGACACTGATAAATTAGCTTCTGTTTTTTACACCCTG
ATTATCCCCATGTTGAATCCCTTGATCTACAGCTTGAGGAATAAAGATGTAAAAGATGCTCTTCATAGGA
CAGGGAAAAAACTACACAGTGTTTGCTTTTGA

Translation (313 aa):
MENQNRTVVTEFILMGITDHPELQSSLFGLFLLIYLISLVGNLGMIVLTMVDSRLQTPMYFFLRHLATTD
LGYSTTVGPKMLTNFIVDQNRISFNLCATQLAFFLLFIACELFILSAMSYDRYVAICKPLFYMVIMSKRL
CWVLVVIPYVYCTIVALLITIKIFTLSFCGSNVISHFYCDSLPLLSLVCSNTQEIEVIMLFLSAFNLISS
LLLVLVSYLLILIAILRMNSAEGRRKAFSTCGSHLTVVTVFYGTLIFMYMQPKSSHSFDTDKLASVFYTL
IIPMLNPLIYSLRNKDVKDALHRTGKKLHSVCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH