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Report for CCDS22989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22989.1 Public Mus musculus 9 Or8b9 23 108 98 CCDS HistoryNCBI Gene:258412Re-query CCDS DB by CCDS ID:22989.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086063.3 ENSMUSP00000083230.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086063.3Link to Ensembl Protein Viewer:ENSMUSP00000083230.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086063Re-query CCDS DB by Protein ID:ENSMUSP00000083230
Original member Current member EBI ENSMUST00000213956.1 ENSMUSP00000150698.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213956.1Link to Ensembl Protein Viewer:ENSMUSP00000150698.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213956Re-query CCDS DB by Protein ID:ENSMUSP00000150698
Original member Current member NCBI NM_146417.1 NP_666529.1 Accepted alive Link to Nucleotide Sequence:NM_146417.1Link to Protein Sequence:NP_666529.1Re-query CCDS DB by Nucleotide ID:NM_146417Re-query CCDS DB by Protein ID:NP_666529Link to BLAST:NP_666529.1

Chromosomal Locations for CCDS 22989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37854820 37855755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCTGCAGCGAACACCTCCTCAGTGGCAGAGTTCATCCTTGTTGGATTAACAGACCAGCCTCAACTCC
AGATCCCACTCTTCTTCCTGTTTCTAGGTTTCTACATTGTCACCATGGTGGGGAACCTGGGCTTGATCAC
ACTGATAGGGCTGAACTCTCACCTGCATATCCCCATGTACTTTTTCCTCTTCAATTTGTCCTTCATAGAT
TTCAGTTACTCCACCACACTCACCCCTAAAATGCTGGTGGGGTTTGTTCTGAGGAAGAACATCATCTCCT
ATGCAGGGTGTATGACACAGTTTTTCTTCTTCTGCTTCTTTGTCTTTTCTGAGTCTTACATCCTGTCAGC
AATGGCATATGACCGCTATGTTGCCATCTGTAAACCACTGTTGTATAGTGTCACCATGTCTCCCCAAGTG
TGTTCATACCTTTTGTCAGGTGTCTATGGGATGGGAGTTTTTGGGGCTGTGGCCCATATGGGAAACCTAC
AGTTTATAAGCTTCTGTGCTGACAACATCATTAACCACTATATGTGTGACATAATTCCCCTCCTTGAGCT
GTCCTGCAATAGCTCATACATCAATTTGTTGGTGGTTTTTATTGTTGTGACCATTGGCATTGGAGTGCCC
ATTGTTACCATTTTTATATCTTATGGTTTCATCCTCTCTAGCATTCTCCACATTAGTTCTAAAGAAGGCA
GGTCGAAAGCCTTTAGTACATGTACGTCCCATATTATTGTAGTGTCTCTCTTTTTTGGGTCAGGAGCTTT
TATGTACCTCAAACCACCTTCTAGTTTGCCTCTGGATCAGGGAAAAGTATCCTCTGTTTTCTACACCGCT
GTGGTGCCCATGTTCAATCCATTAATCTATAGCCTGAGGAATAAGGATGTCAAAATTGCTCTGAAGAAAA
CCTTGAGCAGAAAAAATTTCTCTTAA

Translation (311 aa):
MAAANTSSVAEFILVGLTDQPQLQIPLFFLFLGFYIVTMVGNLGLITLIGLNSHLHIPMYFFLFNLSFID
FSYSTTLTPKMLVGFVLRKNIISYAGCMTQFFFFCFFVFSESYILSAMAYDRYVAICKPLLYSVTMSPQV
CSYLLSGVYGMGVFGAVAHMGNLQFISFCADNIINHYMCDIIPLLELSCNSSYINLLVVFIVVTIGIGVP
IVTIFISYGFILSSILHISSKEGRSKAFSTCTSHIIVVSLFFGSGAFMYLKPPSSLPLDQGKVSSVFYTA
VVPMFNPLIYSLRNKDVKIALKKTLSRKNFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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