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Report for CCDS17729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17729.1 Public Mus musculus 3 Or11i1 23 108 98 CCDS HistoryNCBI Gene:258482Re-query CCDS DB by CCDS ID:17729.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059486.2 ENSMUSP00000054070.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059486.2Link to Ensembl Protein Viewer:ENSMUSP00000054070.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059486Re-query CCDS DB by Protein ID:ENSMUSP00000054070
Original member Current member EBI ENSMUST00000213616.2 ENSMUSP00000149899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213616.2Link to Ensembl Protein Viewer:ENSMUSP00000149899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213616Re-query CCDS DB by Protein ID:ENSMUSP00000149899
Original member Current member EBI ENSMUST00000216610.1 ENSMUSP00000150519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216610.1Link to Ensembl Protein Viewer:ENSMUSP00000150519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216610Re-query CCDS DB by Protein ID:ENSMUSP00000150519
Original member Current member NCBI NM_146489.1 NP_666700.1 Accepted alive Link to Nucleotide Sequence:NM_146489.1Link to Protein Sequence:NP_666700.1Re-query CCDS DB by Nucleotide ID:NM_146489Re-query CCDS DB by Protein ID:NP_666700Link to BLAST:NP_666700.1

Chromosomal Locations for CCDS 17729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106821607 106822557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATGACCTTATCCTGGGAAAATCAAACGGTGATAGTGGAGTTTGTTCTTCGAGGATTCTCTTCCATCT
TACAGCTGAATATTTCCCTCTTTATAATGTTTTGCATCTTCTACATCCTAACCATTTCTGGAAACATCCT
TATTGTTTTTCTAGTGCTGTGCAACCATGCTCTTCACACTCCCATGTACTTCTTCCTAGTGAACCTGTCC
TTTCTGGAGGTCTGCTACACCTCTAACATTGTCCCCAAGATGTTGCTGATTATTATAGCTGACCAGAAGA
CTATCTCAGTGGTTGGTTGCTTGGCACAATTCTACTTCTTTGGATCCCTTGCTGCAACAGAGTGCCTCTT
GCTTGCTGTGATGTCCTATGACCGCTACCTAGCTATCTGCCAGCCTCTCCGATACCCCATCCTCATGACT
GGTTCTCTCTGCTTTAGGTTGGCTATTGGGTCTTGGTTCTGCTGCTTCTTCCTCACAGCCATCACCATGG
TCCTGCTGTGTAGACAAAACTTCTGTGGCCCTAATGAAATTGATCACTTCTTTTGTGACTTTGCCCCTTT
GATCCATCTCTCCTGCATGGATACTTCACTGATTGAGACCGTTGCCTTTGCCACCTCTTCTGCAGTCACT
CTGGTCCCATTTTTCCTTATCACAATATCCTACTCTTGCATCCTCATTGCCATCCTAAGAATCCCATCTG
GCACAGGCAGGAAAAAGGCTTTCTCCACCTGTTCTTCCCATCTCACTGTTGTCACAGTATTTTATGGAAC
ACTGATTGCCACCTATCTTGTGCCCTCAGCCAACTCTTCCCAATATTTACGCAAAGGTTTCTCTCTGCTT
TATACTATCCTGACACCTATGTTTAACCCCATTATCTATAGCCTGAGAAACAGAGACATTCATGAAGCTT
TGAAGAAATGCTTGAGTAAGAAGTCAGACTTTCTCATATGA

Translation (316 aa):
MMTLSWENQTVIVEFVLRGFSSILQLNISLFIMFCIFYILTISGNILIVFLVLCNHALHTPMYFFLVNLS
FLEVCYTSNIVPKMLLIIIADQKTISVVGCLAQFYFFGSLAATECLLLAVMSYDRYLAICQPLRYPILMT
GSLCFRLAIGSWFCCFFLTAITMVLLCRQNFCGPNEIDHFFCDFAPLIHLSCMDTSLIETVAFATSSAVT
LVPFFLITISYSCILIAILRIPSGTGRKKAFSTCSSHLTVVTVFYGTLIATYLVPSANSSQYLRKGFSLL
YTILTPMFNPIIYSLRNRDIHEALKKCLSKKSDFLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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