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Report for CCDS21979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21979.1 Public Mus musculus 7 Or12j5 23 108 98 CCDS HistoryNCBI Gene:258513Re-query CCDS DB by CCDS ID:21979.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064392.7 ENSMUSP00000067699.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064392.7Link to Ensembl Protein Viewer:ENSMUSP00000067699.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064392Re-query CCDS DB by Protein ID:ENSMUSP00000067699
Original member Current member EBI ENSMUST00000215340.1 ENSMUSP00000149744.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215340.1Link to Ensembl Protein Viewer:ENSMUSP00000149744.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215340Re-query CCDS DB by Protein ID:ENSMUSP00000149744
Original member Current member EBI ENSMUST00000215768.1 ENSMUSP00000149758.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215768.1Link to Ensembl Protein Viewer:ENSMUSP00000149758.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215768Re-query CCDS DB by Protein ID:ENSMUSP00000149758
Original member Current member NCBI NM_146520.2 NP_666731.1 Accepted alive Link to Nucleotide Sequence:NM_146520.2Link to Protein Sequence:NP_666731.1Re-query CCDS DB by Nucleotide ID:NM_146520Re-query CCDS DB by Protein ID:NP_666731Link to BLAST:NP_666731.1

Chromosomal Locations for CCDS 21979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140503534 140504457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCTCCAGTGAACCAGTCAGCTATAACCATGTTCATCCTGCAAAACTTCGTTGATGACCCCTGGATCC
AGGATGTTCTCTTCTGCCTCCTCTTTGCCTTGTTTATGGCAGCCATAGCTGGCAATGGCCTGATCATCGC
CACCATTCACAGCAGTCCCAACCTCCACACTCCCATGTACTTCTTCCTAGTCAACCTTGCCCTGATGGAT
ATGATCTGCACTGTGACTGTCTTGCCCAAAGTCCTGCAGAGCCTGGTGGCAGAGAACAGCATATCTTATG
GAGGATGCCTCATACAGATGTTTGTCTTCTCCTGGGTCCTGGGCTCTGAGCTTCTGCTTTTCTCTGCCAT
GGCCTATGACCGCTACCTTGCAATCTGTCGGCCACTGCACTATGGTACCCTCATGAGTGGCAGGGTCTGT
GTGGCCCTTGCAACCTTTGTGTGGTTCATTGGAGCTCTCAATTCCTTGGTGCTCACTTGTCTGGTGTTGC
CACTGTCTTTCTGTGGTTCCAATCTCATTGCACACTTCTTCTGTGAGATCCCTTCTGTATTGATACTGTC
CTGCAGTCCCACCTTTATCAACAATGTCATGACTGTCATTGCAGACATGTTCCTGACAGGCCTGAACTTC
CTGTTGACTATGACATCCTATGTCTTCATCATTTCCAGCATCCTGCGCATCCGCTCAGCTGAGGGCAAGA
AGCGTGCCTTCTCCACCTGCTCTGCCCACCTGGTTGTGGTCACCCTTTATTACTCTACTGCTCTATATAC
TTATGTCCGACCAGCCCTAGGAACTGCTGGGCTCCTGGACAAGGTCATTGCTATTCCGTACACAACTGTG
ACCCCATCTCTGAACCCCCTTATCTATACTCTGAGAAACAAGGAATTCAAAACATCCTTTAAAAAACTTT
TATTTCCCCGTTGA

Translation (307 aa):
MAPVNQSAITMFILQNFVDDPWIQDVLFCLLFALFMAAIAGNGLIIATIHSSPNLHTPMYFFLVNLALMD
MICTVTVLPKVLQSLVAENSISYGGCLIQMFVFSWVLGSELLLFSAMAYDRYLAICRPLHYGTLMSGRVC
VALATFVWFIGALNSLVLTCLVLPLSFCGSNLIAHFFCEIPSVLILSCSPTFINNVMTVIADMFLTGLNF
LLTMTSYVFIISSILRIRSAEGKKRAFSTCSAHLVVVTLYYSTALYTYVRPALGTAGLLDKVIAIPYTTV
TPSLNPLIYTLRNKEFKTSFKKLLFPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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