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Report for CCDS15889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15889.1 Public Mus musculus 2 Ptges 23 108 98 CCDS HistoryNCBI Gene:64292Re-query CCDS DB by CCDS ID:15889.1Re-query CCDS DB by GeneID:64292See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102852.5 ENSMUSP00000099916.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102852.5Link to Ensembl Protein Viewer:ENSMUSP00000099916.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102852Re-query CCDS DB by Protein ID:ENSMUSP00000099916
Original member Current member NCBI NM_022415.3 NP_071860.1 Accepted alive Link to Nucleotide Sequence:NM_022415.3Link to Protein Sequence:NP_071860.1Re-query CCDS DB by Nucleotide ID:NM_022415Re-query CCDS DB by Protein ID:NP_071860Link to BLAST:NP_071860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071860.1 153 Q9JM51 153 100% 0 0

Chromosomal Locations for CCDS 15889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30892577 30892826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30900867 30900949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30903090 30903218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGCCTTCCCCGGGCCTGGTGATGGAGAGCGGCCAGGTGCTCCCGGCCTTTCTGCTCTGCAGCACACTGC
TGGTCATCAAGATGTACGCGGTGGCTGTCATCACAGGCCAGATGAGGCTGCGGAAGAAGGCTTTTGCCAA
CCCCGAGGATGCGCTGAAACGTGGAGGCCTCCAGTATTACAGGAGTGACCCAGATGTGGAGCGCTGCCTC
AGAGCCCACCGCAACGACATGGAGACAATCTATCCTTTCCTCTTCCTCGGCTTCGTGTACTCATTCCTGG
GACCCAACCCTCTGATCGCCTGGATACATTTCCTCGTTGTCCTCACAGGCCGTGTGGTACACACCGTGGC
CTACCTGGGCAAGCTGAACCCACGCCTTCGCTCCGGGGCCTATGTCCTGGCCCAGTTCTCCTGTTTCTCC
ATGGCCCTGCAGATCCTCTGGGAGGTGGCCCACCATCTGTGA

Translation (153 aa):
MPSPGLVMESGQVLPAFLLCSTLLVIKMYAVAVITGQMRLRKKAFANPEDALKRGGLQYYRSDPDVERCL
RAHRNDMETIYPFLFLGFVYSFLGPNPLIAWIHFLVVLTGRVVHTVAYLGKLNPRLRSGAYVLAQFSCFS
MALQILWEVAHHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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