NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50975.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50975.1 Public Mus musculus 3 Sprr2a2 23 108 98 CCDS HistoryNCBI Gene:100303744Re-query CCDS DB by CCDS ID:50975.1Re-query CCDS DB by GeneID:100303744See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50975.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090871.2 ENSMUSP00000088386.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090871.2Link to Ensembl Protein Viewer:ENSMUSP00000088386.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090871Re-query CCDS DB by Protein ID:ENSMUSP00000088386
Original member Current member EBI ENSMUST00000071805.3 ENSMUSP00000102950.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071805.3Link to Ensembl Protein Viewer:ENSMUSP00000102950.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071805Re-query CCDS DB by Protein ID:ENSMUSP00000102950
Original member NCBI NM_001164787.1 NP_001158259.1 Updated not alive Link to Nucleotide Sequence:NM_001164787.1Link to Protein Sequence:NP_001158259.1Re-query CCDS DB by Nucleotide ID:NM_001164787Re-query CCDS DB by Protein ID:NP_001158259
Current member NCBI NM_001164787.2 NP_001158259.1 Accepted alive Link to Nucleotide Sequence:NM_001164787.2Link to Protein Sequence:NP_001158259.1Re-query CCDS DB by Nucleotide ID:NM_001164787Re-query CCDS DB by Protein ID:NP_001158259Link to BLAST:NP_001158259.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158259.1 83 Q9CQK8 83 100% 0 0

Chromosomal Locations for CCDS 50975.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 92253905 92254156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (252 nt):
ATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCC
CTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCC
TTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCA
ACATGCCCTCCTGTGCAATTTCCACCATGCCAGCAGAAGTGA

Translation (83 aa):
MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQS
TCPPVQFPPCQQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH