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Report for CCDS28758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28758.1 Public Mus musculus 17 Or14j10 23 108 98 CCDS HistoryNCBI Gene:258625Re-query CCDS DB by CCDS ID:28758.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072265.2 ENSMUSP00000072115.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072265.2Link to Ensembl Protein Viewer:ENSMUSP00000072115.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000072265Re-query CCDS DB by Protein ID:ENSMUSP00000072115
Original member Current member EBI ENSMUST00000216128.1 ENSMUSP00000150977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216128.1Link to Ensembl Protein Viewer:ENSMUSP00000150977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216128Re-query CCDS DB by Protein ID:ENSMUSP00000150977
Original member Current member NCBI NM_146632.1 NP_666843.1 Accepted alive Link to Nucleotide Sequence:NM_146632.1Link to Protein Sequence:NP_666843.1Re-query CCDS DB by Nucleotide ID:NM_146632Re-query CCDS DB by Protein ID:NP_666843Link to BLAST:NP_666843.1

Chromosomal Locations for CCDS 28758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37623668 37624633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGACTGTAAAAAATATAACCACAATGAGCGGATTTCTCCTCATGGGATTCTCTGACAACCGTGAGCTGC
AGATCTTGTATGCTTTGCTGTTCTTGCTGACATACCTATTGGGCTCAGCAGGGAACTTCATCATTATCAC
CATCACAACACTAGACCCACAGCTCCAGTCTCCAATGTATTACTTTCTGAAGCACCTTTCCATTCTGGAC
CTCTCATCCCTCTCTGTCACAGTCCCCCAGTATGTTGACAGTTCATTGGCGGGAAGTGGCTACATTTCAT
ATGGACAGTGCATGCTGCAGATTTTTTTCTTTGCAGCTTTTGCCTGGGGTGAGGTAGCTATTCTCACAGT
GATGTCATACGATCGGTATGTAGCTATTTGCCTTCCACTCCACTATGAGGTCATCATGAGTCCCAGAAAG
TGTACGTGGGCAGTGACAAGTGTATGGCTAAGCAGTGTAATTCCAGGAACCCTGTATATAGCATCCATAT
TCTCTATTAGATTCTGTAGGGCCAAAATAATTCACCAATTATTCTGTGATGTTCCCCAGTTGCTCAAGCT
GTCCTGCTCTAATGATCACCTTGTAGTAATAGGGATGGTTAGTTTCATGACTGCAGTGGCCTTTGCCTGC
TTCGTTGGGATTGTCATCTCCTATGTCCACATATTCTCCACAGTTCTCAGAATGCCCTCTGCTGAAAGCA
GGTCTAAGGTCTTCTCTACTTGCCTGCCCCACCTTTTTGTTGTCTCACTATTTCTTTCTACAGGCTCCTG
TGCATATCTAAACACAAGCTCAGACTCTCCAACTGCTTTAGAGTTCTTGTTCTCTATCTTTTACACAGTA
CTACCTCCAACTCTCAACCCTGTTATTTATAGTCTGAGAAATGAGACGATAAAGAGTGTTGTAAGGAAGT
TACTGTTGAGTTCAAAATTCACTGTTAGAATTATTTGCCCTGTTGCTACTGACTGA

Translation (321 aa):
MTVKNITTMSGFLLMGFSDNRELQILYALLFLLTYLLGSAGNFIIITITTLDPQLQSPMYYFLKHLSILD
LSSLSVTVPQYVDSSLAGSGYISYGQCMLQIFFFAAFAWGEVAILTVMSYDRYVAICLPLHYEVIMSPRK
CTWAVTSVWLSSVIPGTLYIASIFSIRFCRAKIIHQLFCDVPQLLKLSCSNDHLVVIGMVSFMTAVAFAC
FVGIVISYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVSLFLSTGSCAYLNTSSDSPTALEFLFSIFYTV
LPPTLNPVIYSLRNETIKSVVRKLLLSSKFTVRIICPVATD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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