NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71383.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71383.1 Public Mus musculus 4 Coro2a 23 108 98 CCDS HistoryNCBI Gene:107684Re-query CCDS DB by CCDS ID:71383.1Re-query CCDS DB by GeneID:107684See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71383.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107757.7 ENSMUSP00000103386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107757.7Link to Ensembl Protein Viewer:ENSMUSP00000103386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107757Re-query CCDS DB by Protein ID:ENSMUSP00000103386
Original member Current member NCBI NM_178893.4 NP_849224.2 Accepted alive Link to Nucleotide Sequence:NM_178893.4Link to Protein Sequence:NP_849224.2Re-query CCDS DB by Nucleotide ID:NM_178893Re-query CCDS DB by Protein ID:NP_849224Link to BLAST:NP_849224.2

Chromosomal Locations for CCDS 71383.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 46539136 46539267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46540418 46540689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46541893 46541983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46542235 46542347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46543348 46543444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46544063 46544167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46545612 46545728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46546649 46546828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46548768 46548917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46551329 46551445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46562895 46563095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 46564688 46564744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGTGGAATGGCAACAGCAAACTCCGGCCCAGCTCACCTGTGCTCAAACCAAATCAGATGTCATGGCACC
CCCAGTACCGCAGCTCCAAGTTCCGTCATGTCTACGGCAAGCCCGCCAGCAAAGAGAACTGCTACGACTC
TGTGCCCATCACACGCAGCGTCCACGACAACCACTTCTGTGCCGTGAACCCCCACTTCATCGCTGTGGTC
ACTGAATGTGCCGGCGGGGGCGCCTTCCTTGTCATCCCCCTGCACCAGACGGGAAAGTTGGACCCTCACT
ACCCCAAAGTCTGTGGGCACAGAGGGAACGTCTTGGACATCAAATGGAATCCTTTCAATGACTTTGAGAT
TGCCTCCTGTTCTGAAGATGCCACGATTAAGATCTGGAACATCCCCAAGCAACTGTTGACAAGGAACCTC
ACAACCTACAGGAAGGAGCTGATCGGCCATGCTCGCAGGGTGGGGCTGGTGGAGTGGCACCCCACAACTG
CCAACATTCTCTTCAGTGCTGGCTATGACTACAAGGTGATGGTGTGGAACCTGGACACAAAGGATTCTGT
CATTGCTGGGCCAGTGAAGACAATCAACTGTCACCAAGATGTGATCCTCTCCATGTCCTTTAACACCAAC
GGCAGCCTGCTGGCCACCACCTGTAAGGACCGCAAGATTCGGATTGTTGACCCCCGACTAGGGATTGTCC
TCCAGGAAGCCAGCTACAAGGGGCACCGCGCCAACAAAGTACTGTTCCTGGGGAGCCTCAAGAAGCTGCT
ATCCACGGGTACCTCCCGCTGGAACAACCGGCAGATGGCCCTGTGGGACCAGGAAAACCTTTCTGTGCCC
CTTACAGAGGAAGACCTGGATGGCTCTTCTGGTGTGCTGTTCCCCTTCTTTGACTCGGACACCAGCATGC
TGTACATTGTGGGGAAGGGAGACGGGAACATCCGCTACTATGAGGTAAGCATGGAGAAACCTCACCTGAC
CTACCTGACCGAGTACCGCTCCTACAACCCACAGAAGGGGATCGGTATCATGCCAAAGAGAGGTCTCGAT
GTGTCTTCCTGCGAGATCTTCCGCTTCTATAAACTGATCACAACCAAAAGCCTCATCGAGCCAGTGTCCA
TGATTGTACCCCGAAGGTCAGAATCCTACCAAGAGGACATCTACCCGCCCACCGCAGCGGCCCAGCCCTC
CCTGACGGCTCATGAGTGGCTCAGCGGGATGAACAGAGGGCCTATCATGATGTCCCTTAGACCCGGCTCC
GAGCTGCTGGACTCCCAGACACTGCCTCCAGAGAGACCCCTCTCCAATTCTATGGTCCAAGTTTCACCTC
AGCCCTTAGAACCCATGAAACAGCCGGCCGAAGACGGTGACCAGGCGCCCTTCTCTCTACTGGAAGAGAA
GCTAGCAAAGTGGACCGCAGAGCATCATCTGGGAGAGAAGTCCTGCCTCACTAATGGCTTTGATGTTTTC
GAATGCTCCCCACCAAAGACAGAAAATGAGCTGCTGCAGATGTTCTACCGGCAACAGGAGGAGATCCGGA
GGCTCCGGGAGCTGTTAATCCAGAGAGAAGTCCAGACCAAGCAGCTGGAACTAGAGATCAAAAACCTGCG
GATGGCCTTAGGACAGCTCTGA

Translation (543 aa):
MWNGNSKLRPSSPVLKPNQMSWHPQYRSSKFRHVYGKPASKENCYDSVPITRSVHDNHFCAVNPHFIAVV
TECAGGGAFLVIPLHQTGKLDPHYPKVCGHRGNVLDIKWNPFNDFEIASCSEDATIKIWNIPKQLLTRNL
TTYRKELIGHARRVGLVEWHPTTANILFSAGYDYKVMVWNLDTKDSVIAGPVKTINCHQDVILSMSFNTN
GSLLATTCKDRKIRIVDPRLGIVLQEASYKGHRANKVLFLGSLKKLLSTGTSRWNNRQMALWDQENLSVP
LTEEDLDGSSGVLFPFFDSDTSMLYIVGKGDGNIRYYEVSMEKPHLTYLTEYRSYNPQKGIGIMPKRGLD
VSSCEIFRFYKLITTKSLIEPVSMIVPRRSESYQEDIYPPTAAAQPSLTAHEWLSGMNRGPIMMSLRPGS
ELLDSQTLPPERPLSNSMVQVSPQPLEPMKQPAEDGDQAPFSLLEEKLAKWTAEHHLGEKSCLTNGFDVF
ECSPPKTENELLQMFYRQQEEIRRLRELLIQREVQTKQLELEIKNLRMALGQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH