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Report for CCDS20087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20087.1 Public Mus musculus 6 Or2a14 23 108 98 CCDS HistoryNCBI Gene:258648Re-query CCDS DB by CCDS ID:20087.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095953.2 ENSMUSP00000093647.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095953.2Link to Ensembl Protein Viewer:ENSMUSP00000093647.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095953Re-query CCDS DB by Protein ID:ENSMUSP00000093647
Original member Current member EBI ENSMUST00000216411.1 ENSMUSP00000149245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216411.1Link to Ensembl Protein Viewer:ENSMUSP00000149245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216411Re-query CCDS DB by Protein ID:ENSMUSP00000149245
Original member Current member EBI ENSMUST00000215911.1 ENSMUSP00000149261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215911.1Link to Ensembl Protein Viewer:ENSMUSP00000149261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215911Re-query CCDS DB by Protein ID:ENSMUSP00000149261
Original member Current member NCBI NM_146654.1 NP_666865.1 Accepted alive Link to Nucleotide Sequence:NM_146654.1Link to Protein Sequence:NP_666865.1Re-query CCDS DB by Nucleotide ID:NM_146654Re-query CCDS DB by Protein ID:NP_666865Link to BLAST:NP_666865.1

Chromosomal Locations for CCDS 20087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43153307 43154239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGAAAGCCAACCAGACATGGATCACAGAGGTCACTCTACTGGGATTCCAAGCTGACCTAGCTGTGGAGT
GTTTCCTCTTCGGGCTTTTCTCTCTGTTTTATTCCTTTACCCTTCTGGGGAATGGAATCATCTTTGGAAT
AATCTGCCTGGACCACAGACTGCACACACCCATGTACTTCTTCCTCTCTCATCTGGCCATTGTTGACATG
TCCTATGCTTCCAATAATGTCCCCAAGATGCTGGCAAATCTTGTGACTCAAAGAAGAACCATCTCCTTCA
TTCCATGCCTAATGCAAACATTCTTGTATCTGGCTTTTGCTCACATAGAGTGCCTGATTTTAGTGGTGAT
GTCCTATGATAGGTTTGTGGCCATCTGCCACCCCCTACACTACACTGTCATCATGAGTTGGAGAGTGTGT
ACCATTCTGGCTGCTGTTTCCTGGATATTTAGCTTTCTTCTGGCTCTGGTCCATTTGGTCCTCATCCTGA
GGCTGCCCTTCTGTGGGCCTCATGAAGTCAATCACTTCTTCTGTGAAATCCTGTCTGTCCTCAAGCTGGC
CTGTGCTGACACAACACTCAATCAAGTTGTTATCTTTGCAGCTTGTGTGTTCATATTAGTGGGGCCCCTG
TGCTTAGTGCTGGTCTCCTACACACGCATCCTGGTGGCAATCCTGAGGATCCAGTCAGGGGAGGGTCGAA
GAAAGGCCTTTTCCACCTGTTCCTCCCACCTCTGTGTGGTAGGGCTCTTCTTTGGCAGTGCCATTGTCAT
GTACATGGCCCCCAAATCCCAGCACCCTGAACTGCAGCAAAAGATCCTTTCCCTGTTTTACAGCCTTTTC
AACCCTATGCTGAACCCCCTGATCTACAGCCTGAGGAATGCTGAGGTCAAGGGTGCCCTCAGGAGGTCAC
TGTTGAAGGAAAGATCAATGTGA

Translation (310 aa):
MKANQTWITEVTLLGFQADLAVECFLFGLFSLFYSFTLLGNGIIFGIICLDHRLHTPMYFFLSHLAIVDM
SYASNNVPKMLANLVTQRRTISFIPCLMQTFLYLAFAHIECLILVVMSYDRFVAICHPLHYTVIMSWRVC
TILAAVSWIFSFLLALVHLVLILRLPFCGPHEVNHFFCEILSVLKLACADTTLNQVVIFAACVFILVGPL
CLVLVSYTRILVAILRIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYMAPKSQHPELQQKILSLFYSLF
NPMLNPLIYSLRNAEVKGALRRSLLKERSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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