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Report for CCDS27010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27010.1 Public Mus musculus 14 Or4m1 23 108 98 CCDS HistoryNCBI Gene:258658Re-query CCDS DB by CCDS ID:27010.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050928.2 ENSMUSP00000057376.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050928.2Link to Ensembl Protein Viewer:ENSMUSP00000057376.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000050928Re-query CCDS DB by Protein ID:ENSMUSP00000057376
Original member Current member EBI ENSMUST00000217152.1 ENSMUSP00000150732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217152.1Link to Ensembl Protein Viewer:ENSMUSP00000150732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217152Re-query CCDS DB by Protein ID:ENSMUSP00000150732
Original member Current member NCBI NM_146664.2 NP_666875.1 Accepted alive Link to Nucleotide Sequence:NM_146664.2Link to Protein Sequence:NP_666875.1Re-query CCDS DB by Nucleotide ID:NM_146664Re-query CCDS DB by Protein ID:NP_666875Link to BLAST:NP_666875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666875.1 313 Q8VFT4 313 100% 0 0

Chromosomal Locations for CCDS 27010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50319892 50320833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAACCTGCAAATGATACCACCGTGACCGAATTTATTCTCACTGGTCTATCTCAGACTCGGGAAGTGC
AGCTAGTCTTGTTTGTTATATTTTTATCCTTTTATTTATTCATACTTCCAGTGAATATCCTTATTATCTG
CACAATCAGGCTTGATTCCCATTTGAGTTCTCCCATGTATTTCCTGCTGGCTAATCTAGCCTTCCTTGAT
ATTTGGTATTCCTCTATCACAGCGCCTAAGATGCTTGTAGACTTCTTTGTGGAAAGGAAGATAATATCCT
TTGGTGGGTGTATTGCTCAACTCTTCTTCTTGCACTTTGTCGGGGCCTCTGAGATGTTCCTGCTGACAGT
GATGGCTTTTGACCGCTACGCTGCCATCTGCCGCCCTCTCCACTATGCTACCATCATGAACCGCCGGCTC
TGTTGTATCTTAGTGGCCCTCTCCTGGACAGGGGGCTTCGTACATTCTATAATACAGGTGGCTCTCATTG
TTCGACTCCCATTTTGTGGGCCCAATGAACTAGACAATTATTTTTGTGACATCACTCAGGTTGTCCGGAT
TGCTTGTGCCAATACTTTCCTGGAAGAAATGGTCATGATCTTTAGCAGTGGCCTGATCTCTGTGGTATGC
TTCATTGCTCTGCTAATGTCCTACGCCTTTCTTCTGACCATGCTTAAGAAACACTCAAGCTCAGGTGAGA
GCACCAGCAGGGCTATATCCACTTGTTATTCCCACATCACCATAGTGGTGCTAATGTTTGGACCATCCAT
CTACATTTATGCTCGCCCATTTGACTCGTTTTCTCTAGATAAGGTGGTGTCTGTGTTTCATACTGTGATA
TTCCCTTTACTCAACCCCATCATCTATACATTGAGAAACAAGGAAGTGAAGGCAGCCATGAGAAAGCTGG
TGAATAGATATATTTTTTGCAAAGAAAAGTGA

Translation (313 aa):
MEPANDTTVTEFILTGLSQTREVQLVLFVIFLSFYLFILPVNILIICTIRLDSHLSSPMYFLLANLAFLD
IWYSSITAPKMLVDFFVERKIISFGGCIAQLFFLHFVGASEMFLLTVMAFDRYAAICRPLHYATIMNRRL
CCILVALSWTGGFVHSIIQVALIVRLPFCGPNELDNYFCDITQVVRIACANTFLEEMVMIFSSGLISVVC
FIALLMSYAFLLTMLKKHSSSGESTSRAISTCYSHITIVVLMFGPSIYIYARPFDSFSLDKVVSVFHTVI
FPLLNPIIYTLRNKEVKAAMRKLVNRYIFCKEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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