NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2596.1 Public Homo sapiens 3 FANCD2OS 24 110 108 CCDS HistoryNCBI Gene:115795Re-query CCDS DB by CCDS ID:2596.1Re-query CCDS DB by GeneID:115795See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2596.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450660.3 ENSP00000429608.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450660.3Link to Ensembl Protein Viewer:ENSP00000429608.1Re-query CCDS DB by Nucleotide ID:ENST00000450660Re-query CCDS DB by Protein ID:ENSP00000429608
Original member Current member EBI ENST00000524279.1 ENSP00000429663.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524279.1Link to Ensembl Protein Viewer:ENSP00000429663.1Re-query CCDS DB by Nucleotide ID:ENST00000524279Re-query CCDS DB by Protein ID:ENSP00000429663
Original member Current member NCBI NM_001164839.2 NP_001158311.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164839.2Link to Protein Sequence:NP_001158311.1Re-query CCDS DB by Nucleotide ID:NM_001164839Re-query CCDS DB by Protein ID:NP_001158311Link to BLAST:NP_001158311.1
Original member Current member NCBI NM_173472.2 NP_775743.1 Accepted alive Link to Nucleotide Sequence:NM_173472.2Link to Protein Sequence:NP_775743.1Re-query CCDS DB by Nucleotide ID:NM_173472Re-query CCDS DB by Protein ID:NP_775743Link to BLAST:NP_775743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158311.1 177 Q96PS1 177 100% 0 0
NP_775743.1 177 Q96PS1 177 100% 0 0

Chromosomal Locations for CCDS 2596.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10104241 10104774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGCAGGATACCAGCTCTGGTCACCATGGACCCCACTGGATGAGAGTTTCCAATGGCTGCGGCACACGA
CACCTACACCTTCCTCCAAGCACCCATTCAAGGCCTCCCCCTGCTTCCCACACACACCGTCCGACCTTGA
AGTGCAGCTGTGCTTTCAAGAGGTCACTCTAGTCCTAGACAGCCCATTCCTGGAATCTGGAGTGAGTCCC
AAGTTACCCTGCCACACATCAGAGTTGCGCACGATGAACAACAAAGGACTGGTCAGGAAGCCCCAGCCCA
TCCGCCTCAGTGGAGTAGATTCTGTCTTTGGCAGGGTTATCACAGCTCAGCCACCAAAGTGGACCGGGAC
TTTCAGAGTTTCAGACAAGTCAGCCTTTTGCAAAATCATTAGCAGGGAGCACCAGTGGCCCATTGGACTG
AAGGAGCCTCAGATTCAGATGACAGTCACTATGTGCAAACAGATGCTGCGCTCTATCCTCTTGCTGTATG
CAACTTACAAAAAGTGCACCTTTGCCTTGCAGCACTCCAAGTAA

Translation (177 aa):
MAGYQLWSPWTPLDESFQWLRHTTPTPSSKHPFKASPCFPHTPSDLEVQLCFQEVTLVLDSPFLESGVSP
KLPCHTSELRTMNNKGLVRKPQPIRLSGVDSVFGRVITAQPPKWTGTFRVSDKSAFCKIISREHQWPIGL
KEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH