NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29626.1 Public Mus musculus 19 Or5an11 23 108 98 CCDS HistoryNCBI Gene:258681Re-query CCDS DB by CCDS ID:29626.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073507.2 ENSMUSP00000073203.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073507.2Link to Ensembl Protein Viewer:ENSMUSP00000073203.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073507Re-query CCDS DB by Protein ID:ENSMUSP00000073203
Original member Current member EBI ENSMUST00000207969.3 ENSMUSP00000146532.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207969.3Link to Ensembl Protein Viewer:ENSMUSP00000146532.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207969Re-query CCDS DB by Protein ID:ENSMUSP00000146532
Original member Current member EBI ENSMUST00000214638.2 ENSMUSP00000149035.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214638.2Link to Ensembl Protein Viewer:ENSMUSP00000149035.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000214638Re-query CCDS DB by Protein ID:ENSMUSP00000149035
Original member Current member EBI ENSMUST00000215407.2 ENSMUSP00000150313.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215407.2Link to Ensembl Protein Viewer:ENSMUSP00000150313.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215407Re-query CCDS DB by Protein ID:ENSMUSP00000150313
Original member Current member EBI ENSMUST00000214551.2 ENSMUSP00000150872.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214551.2Link to Ensembl Protein Viewer:ENSMUSP00000150872.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000214551Re-query CCDS DB by Protein ID:ENSMUSP00000150872
Original member Current member EBI ENSMUST00000214613.2 ENSMUSP00000151073.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214613.2Link to Ensembl Protein Viewer:ENSMUSP00000151073.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000214613Re-query CCDS DB by Protein ID:ENSMUSP00000151073
Original member Current member NCBI NM_146686.2 NP_666897.2 Accepted alive Link to Nucleotide Sequence:NM_146686.2Link to Protein Sequence:NP_666897.2Re-query CCDS DB by Nucleotide ID:NM_146686Re-query CCDS DB by Protein ID:NP_666897Link to BLAST:NP_666897.2

Chromosomal Locations for CCDS 29626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12268232 12269170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGATTGGGGAAAGAAATATTACCAAGATCACCCAGTTCATCCTCCTGGGATTCTCAGATTTCCCCAGAA
TCACAGTACCTCTTTTTGTAATGTTTTTGATGATCTACACTTTGGCTGTAACCTGGAACTTTTCCCTTAT
TGCTTTAATAAGATTGGATTCCCACCTTCACACACCCATGTATTTCTTCCTCAGTAATCTCTCCATTATA
GACATCTGCTATATCACTTCCACAGCCCCCAAGATGCTTTCCAACTTCTTCCAGGAAAACCAAACTATCA
GCTTTGTGGGCTGCATAGTTCAATACTTTATCCTTTCCACTATGGGGCTGACTGAATCTTGCCTCATGAC
AGCCATGGCCTATGACAGGTATGCTGCCATTTGTAACCCTCTTCTGTACTCATCAGTCATGTCACCCACA
CTATGTGCTCAGATGGTGATGGGAAGCTACACAGCTGGACTCACAGGCTCTGTATCTCAGATATGTGCCT
TGCTGCAGCTCTATTTCTGTGGCCCTAATGTCATTAGGCATTTCTTCTGTGACATATCTCAGCTATTAAA
TCTATCCTGTAGTGATGCTTTCTTTGTACAGGTCCTTCTTGCTATATTAACCATGTGTTTTGGAATAGCA
AATGCCTTAGCCACCATGCTGTCCTATGGTTTCATCGTCCTGTCCATCTTAAAGATCACTTCAGCTAAAG
GCAGGTCCAAGGCCTTCAACACCTGTGCTTCTCACCTGACAGCTGTTTCTCTCTTCTATAGTACTGCCAT
CTTTGTCTATTTGCGATCCAGCTCTGGTGGCTCCTCTAGTTTTGACAGATTTGCATCTGTCTTCTACACT
GTGGTGATTCCTATGTTGAACCCTTTGATTTATAGTCTGAGAAACAAGGAAATCAAAGATGCCATGAAGC
GGTTGCAGAAAAAGAAAATTTGCAGCTAA

Translation (312 aa):
MIGERNITKITQFILLGFSDFPRITVPLFVMFLMIYTLAVTWNFSLIALIRLDSHLHTPMYFFLSNLSII
DICYITSTAPKMLSNFFQENQTISFVGCIVQYFILSTMGLTESCLMTAMAYDRYAAICNPLLYSSVMSPT
LCAQMVMGSYTAGLTGSVSQICALLQLYFCGPNVIRHFFCDISQLLNLSCSDAFFVQVLLAILTMCFGIA
NALATMLSYGFIVLSILKITSAKGRSKAFNTCASHLTAVSLFYSTAIFVYLRSSSGGSSSFDRFASVFYT
VVIPMLNPLIYSLRNKEIKDAMKRLQKKKICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH