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Report for CCDS29644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29644.1 Public Mus musculus 19 Or5b12 23 108 98 CCDS HistoryNCBI Gene:258696Re-query CCDS DB by CCDS ID:29644.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29644.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054737.2 ENSMUSP00000055664.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054737.2Link to Ensembl Protein Viewer:ENSMUSP00000055664.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000054737Re-query CCDS DB by Protein ID:ENSMUSP00000055664
Original member Current member EBI ENSMUST00000213713.1 ENSMUSP00000149191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213713.1Link to Ensembl Protein Viewer:ENSMUSP00000149191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213713Re-query CCDS DB by Protein ID:ENSMUSP00000149191
Original member Current member EBI ENSMUST00000216888.1 ENSMUSP00000149296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216888.1Link to Ensembl Protein Viewer:ENSMUSP00000149296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216888Re-query CCDS DB by Protein ID:ENSMUSP00000149296
Original member Current member EBI ENSMUST00000213177.1 ENSMUSP00000151134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213177.1Link to Ensembl Protein Viewer:ENSMUSP00000151134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213177Re-query CCDS DB by Protein ID:ENSMUSP00000151134
Original member Current member NCBI NM_146701.1 NP_666912.1 Accepted alive Link to Nucleotide Sequence:NM_146701.1Link to Protein Sequence:NP_666912.1Re-query CCDS DB by Nucleotide ID:NM_146701Re-query CCDS DB by Protein ID:NP_666912Link to BLAST:NP_666912.1

Chromosomal Locations for CCDS 29644.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12919363 12920307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAGAATAGTACAGAGGTGACTGAGTTCATTCTCGCAGGATTAACAGATGACCCAAAGCTCCAGATAC
CACTCTTCATTGTCTTCCTTCTCATCTATCTCAGCACTGTGCTTGGGAACCTGGGAATGGTAGGGTTGAT
CCTGCTGGACTCACATCTCCACACTCCCATGTACCTTTTCCTCAGTCATCTATCTCTGGTGGACTTTGGT
TATTCTTCAGCTGTCACTCCCAAAGTAATGTCAGGTCTCCTTTCAATAGACAAAACCATATCCCATAACA
CTTGTGGCACCCAATTCTTCTTCTTCGTGGGCTTTATAACCACAGAAAGCTTTCTCTTGGCTGCCATGGC
TTATGACCGCTATGCAGCAGTATGTAAGCCACTGCATTACACCACCACCATGACTACAAATACTTGTGCT
TGTCTGACCATAGGTTCCTATGTCTGTGGCTTCCTGAATTCCTCTATCCACACTGGGAACATTTTCAGGC
TTTCCTTCTGCAAGTTCAATGTGATAGACCACTTTTTCTGTGATGCACCACCTCTCCTGGCCCTATCGTG
CTCAGACACCTATATCAGTGAGACTGTGATTTTCTTTGTTGTGGGTTTTAATGCTCTTTTCTCTATTGTA
GTCATTACGATCTCCTATCTGCTTATTTTCATCACTATTCTGAGGATGCGTTCATCTGAAGGACGCCACA
AGGCCTTTTCTACCTGTGCTTCCCACCTCACTGCAGTCTCCATCTTCTATGGGACTGTCATCTTCATGTA
CTTACAGCCCAGTTCCAGTCACACCATGGGCACTGACAAGATGGCATCTGTGTTCTATACCATGGTCATT
CCCATGCTGAACCCTTTGGTCTATAGCCTGAGGAACAAAGAGGTTAAAGGTGCATTTAAAAAAGCTGTAG
GAAATGCAAAATCTGCCTTAACATTCTTATTTTAG

Translation (314 aa):
MENSTEVTEFILAGLTDDPKLQIPLFIVFLLIYLSTVLGNLGMVGLILLDSHLHTPMYLFLSHLSLVDFG
YSSAVTPKVMSGLLSIDKTISHNTCGTQFFFFVGFITTESFLLAAMAYDRYAAVCKPLHYTTTMTTNTCA
CLTIGSYVCGFLNSSIHTGNIFRLSFCKFNVIDHFFCDAPPLLALSCSDTYISETVIFFVVGFNALFSIV
VITISYLLIFITILRMRSSEGRHKAFSTCASHLTAVSIFYGTVIFMYLQPSSSHTMGTDKMASVFYTMVI
PMLNPLVYSLRNKEVKGAFKKAVGNAKSALTFLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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