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Report for CCDS16270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16270.1 Public Mus musculus 2 Or5t15 23 108 98 CCDS HistoryNCBI Gene:258725Re-query CCDS DB by CCDS ID:16270.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099874.1 ENSMUSP00000097459.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099874.1Link to Ensembl Protein Viewer:ENSMUSP00000097459.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099874Re-query CCDS DB by Protein ID:ENSMUSP00000097459
Original member Current member NCBI NM_146730.2 NP_666941.2 Accepted alive Link to Nucleotide Sequence:NM_146730.2Link to Protein Sequence:NP_666941.2Re-query CCDS DB by Nucleotide ID:NM_146730Re-query CCDS DB by Protein ID:NP_666941Link to BLAST:NP_666941.2

Chromosomal Locations for CCDS 16270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86850770 86851696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGAAAAACATCACAGAAGCTACTTTCTTTGTTCTCAAGGGACTCACAGACAACAATGAACTTCAGATCA
TTCTCTTTTTCCTCTTCCTAGCAATTTACCTTTTTACTCTAATAGGAAATGTAGGACTTATTATTTTAGT
TGTTGGTGATCCCCAACTCCACAACCCTATGTACTGTTTCCTCAGTGCATTGTCTTTTGTAGATGCTTGC
TATTCTTCAGATATCACTCCAAATATGTTAGTAGGCTTTATGTCTAAAAGCAAAATCATTTCATTTCATG
GTTGTGCAACACAGATGTTTCTTGCTGTTACATTTGGAACCACAGAATGTTTTCTTTTGGCAGCAATGGC
TTATGACCGATATGTAGCCATTCACGACCCACTACTGTATGCAGTGAGCATGTCTCCTCGAGTCTATTTA
CCACTCATCATTGCTTCCTATGCTGGTGGAATTTTGCATGCTATTATCCACACAGTGGCCACTTTCAGCC
TGTCTTTCTGTCAGTCCAATGAAGTCAAACATATATTCTGTGATATACCACCTCTACTTGCTATTTCCTG
CTCTGAAACTTATGTAAATGAGCTCTTGCTCTTCTTCTTTGTGAGTTTCATTGAGCTAGTCACCATCCTG
ATCATTCTGTTTTCCTATGCTTTTATCCTGTTGTCAATCCTGAAGATGAATTCAGCTGAAGGGAGAAGAA
AAGTCTTCTCTACATGTGGATCTCACCTCACTGCTGTGTCCATTTGTTATGGCACAAGCCTCTTCATGTA
TGTAAGACCTAGTTCCAACTATTCCCTGGAGCATGACATGATCGTGTCAATATTTTATACCATTGGGATT
CCCATGCTCAACCCCATCATCTACAGTCTGAGAAACAAAGATGTAAAAGAGGCAATAAAAAGAGTTTTGA
GAAAAAATTTCATATAA

Translation (308 aa):
MKNITEATFFVLKGLTDNNELQIILFFLFLAIYLFTLIGNVGLIILVVGDPQLHNPMYCFLSALSFVDAC
YSSDITPNMLVGFMSKSKIISFHGCATQMFLAVTFGTTECFLLAAMAYDRYVAIHDPLLYAVSMSPRVYL
PLIIASYAGGILHAIIHTVATFSLSFCQSNEVKHIFCDIPPLLAISCSETYVNELLLFFFVSFIELVTIL
IILFSYAFILLSILKMNSAEGRRKVFSTCGSHLTAVSICYGTSLFMYVRPSSNYSLEHDMIVSIFYTIGI
PMLNPIIYSLRNKDVKEAIKRVLRKNFI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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