NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23002.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23002.1 Public Mus musculus 9 Or8c8 23 108 98 CCDS HistoryNCBI Gene:258802Re-query CCDS DB by CCDS ID:23002.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23002.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093865.2 ENSMUSP00000091388.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093865.2Link to Ensembl Protein Viewer:ENSMUSP00000091388.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093865Re-query CCDS DB by Protein ID:ENSMUSP00000091388
Original member Current member NCBI NM_146806.2 NP_667017.2 Accepted alive Link to Nucleotide Sequence:NM_146806.2Link to Protein Sequence:NP_667017.2Re-query CCDS DB by Nucleotide ID:NM_146806Re-query CCDS DB by Protein ID:NP_667017Link to BLAST:NP_667017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667017.2 313 P34985 313 99.6805% 0 1

Chromosomal Locations for CCDS 23002.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38253419 38254360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGATGCAAATGACTATGGAAAATAAATCTTCAGTGTCAGAATTTATTCTTATGGGATTGACAGACCAAC
CTGAGCTCCAGCTGCCCTTATTTGTTCTGTTCTTGATGAACTACACAGCTACTGTGATGGGAAACTTAAC
TTTAATGAATCTCATTTGCCTAAACTCAAACCTTCATACTCCTATGTACTTCTTTCTCTTTAATCTGTCC
TTCATTGATTTCTGTTATTCGATGGTCTTTACACCCAAAATGTTGATGAGTTTTATTTTAGAGAAGAATA
CCATCTCTTTTGGAGGATGCATGGCTCAGTTATTTTTCTTCCTATTTTTTGTGAACTCTGAGAGTTATGT
GTTGACAGCCATGGCCTATGATCGCTATGTGGCTATTTGTAAACCACTAACATACAAAGTTATTATGTCC
CCTAAGATCTGTTGTCTGTTAATATTTAGTTCTTACTTGATGGGGTTTGCTAGTGCCATGGCTCACACAG
GGTGTATGATCAGGCTTAGCTTTTGTGATTCTAACATCATCAACCACTACATGTGTGACATCTTCCCTCT
TCTCCCACTCTCCTGCAGTAGCACCTATGTTAATGAGCTTATGAGTTCAGTTGTGGTAGGTTCAGCTATC
ATTTTATGCTGCCTCATTATTTTAATCTCTTATGCTATGATACTTTTCAATATTATTCATATGTCATCAG
GTAAAGGTTGGTCCAAAGCCTTGGGCACATGTGGGTCTCACATCATTACTGTTAGTCTCTTTTATGGATC
TGGGCTGCTTGCTTATGTCAAACCATCTTCTGCTAAGACTGTGGGCCAGGGAAAATTTTTCTCTGTGTTT
TACACTTTATTGGTGCCCATGTTGAACCCTCTTATTTATAGCCTCAGAAACAAGGATGTCAAACTTGCTG
TGAAGAAAACCTGGAAAAGAATCACAAGCTGA

Translation (313 aa):
MMQMTMENKSSVSEFILMGLTDQPELQLPLFVLFLMNYTATVMGNLTLMNLICLNSNLHTPMYFFLFNLS
FIDFCYSMVFTPKMLMSFILEKNTISFGGCMAQLFFFLFFVNSESYVLTAMAYDRYVAICKPLTYKVIMS
PKICCLLIFSSYLMGFASAMAHTGCMIRLSFCDSNIINHYMCDIFPLLPLSCSSTYVNELMSSVVVGSAI
ILCCLIILISYAMILFNIIHMSSGKGWSKALGTCGSHIITVSLFYGSGLLAYVKPSSAKTVGQGKFFSVF
YTLLVPMLNPLIYSLRNKDVKLAVKKTWKRITS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH