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Report for CCDS16292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16292.1 Public Mus musculus 2 Or12e7 23 108 98 CCDS HistoryNCBI Gene:258834Re-query CCDS DB by CCDS ID:16292.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071355.1 ENSMUSP00000071313.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071355.1Link to Ensembl Protein Viewer:ENSMUSP00000071313.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071355Re-query CCDS DB by Protein ID:ENSMUSP00000071313
Original member Current member EBI ENSMUST00000213366.2 ENSMUSP00000150504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213366.2Link to Ensembl Protein Viewer:ENSMUSP00000150504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213366Re-query CCDS DB by Protein ID:ENSMUSP00000150504
Original member Current member NCBI NM_146837.2 NP_667048.2 Accepted alive Link to Nucleotide Sequence:NM_146837.2Link to Protein Sequence:NP_667048.2Re-query CCDS DB by Nucleotide ID:NM_146837Re-query CCDS DB by Protein ID:NP_667048Link to BLAST:NP_667048.2

Chromosomal Locations for CCDS 16292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87457167 87458111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAAATTCACAGAAATCAGGGCAGAGGACAATGCTTCCACTGTGACAGAGTTTCTCCTCCTGGGATTTT
CTGACCTTCCTAACTTACAAGGGATTTTGTTTGGGTTGTTCTCCATAATTTACTTGATCATATTGATTGG
AAATAGTTTCATAATTGTGATAACTAGAATTGATCCTGCACTACAGAAGCCCATGTATTTTTTCCTGGCA
AATTTTTCTTCTCTGGAAATCTGTTATGTATCAGTCACTCTCCCTAGGATTCTGTTTAACATTGCTACTC
AAGACAGAAGCATTTCTGTGGTGAGCTGTGCCACACAAATGTGTTTCTTCCTTATGCTGGGAGCTACTGA
GTGTTTCCTGCTGGCTGTGATGTCCTATGATCGCTATGTGGCCATCTGCAATCCTCTGCACTATCCTCTG
GTCATGAACCCAACAAAGTGCACTCAGCTGGCAGCAGCCTCCTGGCTTGGAGGCATCCCTGTCCAGATAG
GACAAACCTGTCAGATATTTTCTCTACATTTCTGCAATTCTAACCAAATAGATCACTTCTTTTGTGACTT
ACCTCCCATTCTCAAGCTGGCCTGTGGAGATACTTCAATACACGAGTTGTCTGTCTACTTAGTAGCTATG
CTGTTTGTTGCATTCCCTTTCTTGTTGATACTTGCCTCTTATACCAAAATCATTGCCACCATTCTGAAGT
TGCCAACAGCCACAGGACGGGCAAAAGCCTTCTCAACATGTTCTTCCCATTTGCTTGTGGTGTTTTTGTT
TTTTGGATCAGCTACTATTACCTACTTGAGGCCAAAGTCCACCCATTCTCCAGGAACTGATAAACTACTC
TCTTTGTTTTACACCATTGTGACTCCCATGTTCAATCCTCTGATATACAGTCTTAGAAATAAGGAGGTGA
TTGCTGCACTGAGAAAACTGTTACATATCAAGTAG

Translation (314 aa):
MKFTEIRAEDNASTVTEFLLLGFSDLPNLQGILFGLFSIIYLIILIGNSFIIVITRIDPALQKPMYFFLA
NFSSLEICYVSVTLPRILFNIATQDRSISVVSCATQMCFFLMLGATECFLLAVMSYDRYVAICNPLHYPL
VMNPTKCTQLAAASWLGGIPVQIGQTCQIFSLHFCNSNQIDHFFCDLPPILKLACGDTSIHELSVYLVAM
LFVAFPFLLILASYTKIIATILKLPTATGRAKAFSTCSSHLLVVFLFFGSATITYLRPKSTHSPGTDKLL
SLFYTIVTPMFNPLIYSLRNKEVIAALRKLLHIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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